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Detailed information on CNT3024873


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 1e-82

BLAST vs NONCODE:
NONMEST004097, E-value = 7e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Populus trichocarpaSetaria viridis56.3858.4688.68318forward
CNT30546678Populus trichocarpaIpomoea triloba60.2825.2887.65340forward
CNT30518292Populus trichocarpaJuglans regia67.282.5788.13379forward
CNT30698284Populus trichocarpaQuercus lobata23.7646.8594.78134forward
CNT30727588Populus trichocarpaCorchorus capsularis67.0228.1289.15378forward
CNT30380192Populus trichocarpaManihot esculenta67.0216.5789.42378forward
CNT30629687Populus trichocarpaVigna unguiculata85.9924.5687.01485forward
CNT30637620Populus trichocarpaCapsicum annuum43.6212.8186.59246forward
CNT3093993Populus trichocarpaSolanum tuberosum30.3232.7692.4171forward
CNT30287202Populus trichocarpaTriticum aestivum67.0252.5788.36378forward
CNT30387246Populus trichocarpaTriticum turgidum67.0232.8487.3378forward
CNT3084119Populus trichocarpaVigna radiata64.0120.2886.43361forward
CNT30146188Populus trichocarpaMedicago truncatula58.6942.1786.1331forward
CNT30440878Populus trichocarpaAegilops tauschii44.531.9390.04251forward
CNT30248159Populus trichocarpaAvena sativa60.2831.0587.35340forward
CNT30665783Populus trichocarpaTriticum dicoccoides60.2837.3288.82340forward
CNT30598511Populus trichocarpaFraxinus excelsior67.0258.0688.62378forward
CNT30132437Populus trichocarpaLolium perenne67.0231.4584.92378forward
CNT3011290Populus trichocarpaZea mays67.0227.4987.04378forward
CNT30608684Populus trichocarpaGossypium raimondii30.1440.3889.41170forward
CNT30232362Populus trichocarpaAnanas comosus44.1543.6187.15249forward
CNT3067093Populus trichocarpaLeersia perrieri29.7937.5889.88168forward
CNT30203418Populus trichocarpaHelianthus annuus37.4151.5986.26211forward
CNT30680463Populus trichocarpaTriticum urartu59.2249.0589.52334forward
CNT30721805Populus trichocarpaTriticum spelta35.9914.0690.15203forward
CNT30480842Populus trichocarpaArabidopsis halleri29.7934.589.88168forward
CNT30368719Populus trichocarpaSorghum bicolor61.5225.6386.46347forward
CNT30424894Populus trichocarpaPapaver somniferum58.6944.4987.31331forward
CNT30644842Populus trichocarpaCannabis sativa43.6260.8985.77246forward
CNT30120727Populus trichocarpaCitrus clementina29.0829.8292.68164forward
CNT30147611Populus trichocarpaBrachypodium distachyon35.2833.1788.94199forward
CNT30101053Populus trichocarpaOryza rufipogon58.1639.4786.89328forward
CNT30585575Populus trichocarpaEchinochloa crusgalli61.3567.7187.57346forward
CNT30116111Populus trichocarpaOryza nivara56.9136.6986.92321forward
CNT30724009Populus trichocarpaLupinus angustifolius67.0234.8185.19378forward

Expression of CNT3024873

Peptides detected in this lncRNA

>peptide 1 (42 aa)
STDLTSVLSPVGPNVTTMPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 2 (51 aa)
LNRLDFSTQSSWTECDNHAGLDDTSFNTTHWDSSDTTNLVHILKWETEGLV*

Sequence

>CNT3024873
TCTCAACAGACTTGACTTCAGTACTCAGTCCAGTTGGACCGAATGTGACAACCATGCCGGGCTTGATGACACCAGTTTCAACACGACCCACTGGGACAGT
TCCGATACCACCAATCTTGTACACATCCTGAAGTGGGAGACGGAGGGGCTTGTCTGAGGGCCTCTTGGGCTCCTGGATCTGGTCGAGGGCATCCAGGAGT
GTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAATCCAGAGATTGGGACAAAGGGAATCTTGTCAGGGTTGTAAC
CAACCTTCTTCAAGTAGGAGGATACTTCCTTGACAATTTCATCATACCTTGCCTTGGAGTATTTTGGAGTGGTGGCATACTTGAATGACCTCTTGTTCAT
CTCAGCAGCTTCCTTCTCAAACCTCTCAATGACACGCTTGTCAATACCTCCAAGCTTATAAATCAAGTGGCCAGTGGTGGTCGACTTTCCAGAGTCAACA
TGGCCAATGACCACGATGTTGATGTGAGTCTTCTCTTTACCCATGCTTAAGTCTTAGTGTTAAA