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Detailed information on CNT30355521


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONBNAT007048, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Lactuca sativaOryza sativa72.5443.9485.55692forward
CNT30677701Lactuca sativaSetaria viridis68.7695.7784.6656forward
CNT30521010Lactuca sativaSetaria italica71.2862.3985.59680forward
CNT30639730Lactuca sativaNymphaea colorata54.7256.880.65522forward
CNT30535563Lactuca sativaEucalyptus grandis75.1687.8782.71717forward
CNT30316757Lactuca sativaCorylus avellana75.0559.7785.2716forward
CNT30546799Lactuca sativaIpomoea triloba75.1658.3985.22717forward
CNT30518094Lactuca sativaJuglans regia75.0576.584.92716forward
CNT30371709Lactuca sativaArabidopsis thaliana62.4792.5586.58596forward
CNT30618435Lactuca sativaSesamum indicum36.4870.8885.06348forward
CNT3021232Lactuca sativaCitrullus lanatus72.9656.2284.34696forward
CNT30727590Lactuca sativaCorchorus capsularis72.8551.2986.19695forward
CNT30380091Lactuca sativaManihot esculenta89.4150.2483.35853forward
CNT30525464Lactuca sativaPhaseolus vulgaris39.4166.5586.17376forward
CNT30629544Lactuca sativaVigna unguiculata39.249.4787.7374forward
CNT30194937Lactuca sativaPisum sativum75.2671.8785.24718forward
CNT30160120Lactuca sativaPistacia vera75.0557.686.03716forward
CNT30287202Lactuca sativaTriticum aestivum45.1859.9483.99431forward
CNT30387246Lactuca sativaTriticum turgidum59.0148.9183.3563forward
CNT30564256Lactuca sativaActinidia chinensis63.151.7284.22602forward
CNT3084148Lactuca sativaVigna radiata58.0734.0185.38554forward
CNT30541587Lactuca sativaBrassica napus75.0560.8885.61716forward
CNT30234210Lactuca sativaBrassica oleracea75.0565.0386.03716forward
CNT30173274Lactuca sativaTrifolium pratense71.915187.46686forward
CNT30146334Lactuca sativaMedicago truncatula49.5847.5986.05473forward
CNT30440878Lactuca sativaAegilops tauschii26.3131.9388.05251forward
CNT30246955Lactuca sativaAvena sativa72.2239.0484.91689forward
CNT30665783Lactuca sativaTriticum dicoccoides49.0651.3785.68468forward
CNT30310418Lactuca sativaCamelina sativa75.0561.7287.43716forward
CNT3059230Lactuca sativaArabidopsis lyrata74.1158.8286.99707forward
CNT3079066Lactuca sativaBrassica juncea75.0559.9786.31716forward
CNT30614135Lactuca sativaArabis alpina75.1645.9687.73717forward
CNT30598511Lactuca sativaFraxinus excelsior47.6969.8984.4455forward
CNT30449495Lactuca sativaSaccharum spontaneum69.8154.7284.83666forward
CNT30132437Lactuca sativaLolium perenne63.6350.584.18607forward
CNT3011166Lactuca sativaZea mays71.2848.0983.38680forward
CNT30608730Lactuca sativaGossypium raimondii46.8674.583.89447forward
CNT30203420Lactuca sativaHelianthus annuus21.2840.4489.66203forward
CNT30127375Lactuca sativaCorymbia citriodora53.1490.8684.02507forward
CNT30624959Lactuca sativaDaucus carota35.0198.2485.03334forward
CNT30685098Lactuca sativaTriticum urartu49.1631.985.29469forward
CNT30350898Lactuca sativaEragrostis tef71.2861.0486.03680forward
CNT30480841Lactuca sativaArabidopsis halleri41.6163.9387.91397forward
CNT30368770Lactuca sativaSorghum bicolor69.592.685.67663forward
CNT30427751Lactuca sativaPapaver somniferum75.1649.5285.22717forward
CNT30706337Lactuca sativaPrunus avium74.1160.6386707forward
CNT30644842Lactuca sativaCannabis sativa24.3257.4390.09232forward
CNT3037774Lactuca sativaCucumis melo46.6557.5787.64445forward
CNT30100761Lactuca sativaOryza rufipogon3761.6184.99353forward
CNT30580076Lactuca sativaEchinochloa crusgalli36.3726.2386.46347forward
CNT30496962Lactuca sativaDigitaria exilis71.2860.585.59680forward
CNT30116111Lactuca sativaOryza nivara31.3434.1786.62299forward
CNT30594443Lactuca sativaEragrostis curvula71.758.9186.55684forward
CNT30603788Lactuca sativaOryza punctata74.4260.2785.35710forward
CNT30176122Lactuca sativaVigna angularis51.0543.0285.63487forward
CNT30113122Lactuca sativaFicus carica48.9556.2784.15467forward
CNT30724026Lactuca sativaLupinus angustifolius72.9648.3385.2696forward
CNT3050294Lactuca sativaCucumis sativus54.1984.3484.53517forward

Expression of CNT30355521

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSLTANLPRGLVGIILTIPASPFFKNLGSFSSSFPDRLSILVNSSWNLTAM*

>peptide 2 (87 aa)
NPNRQKIKRLDHQNTTPIISLDTLLGCGLGHLSSSRVLLVNTLDHTNSNSLTHVPHSKPSKRLGRHHLNHTCITILQKLGLLLKLLS*

>peptide 3 (51 aa)
MMITWEVKLAAPLAGSSLEFEATYPRLISFTATFLTLNPTLSPGRASVKAS*

>peptide 4 (48 aa)
MMHLNRLDFSGQPCWSEGHNHTRLDDTCLNTSHWHSSNTTDLVNILKW*

>peptide 5 (43 aa)
MLSPSNPEIGTNGILSGLYPTFFKYEDTSFTISSYLPLEYLGV*

>peptide 6 (29 aa)
MGFCLGCIRPSSSMKTLPSRFPRTYPWSI*

Sequence

>CNT30355521
GTAATCCAAACAGACAGAAAATAAAAAGACTCGATCACCAAAACACAACACCTATCATATCACTTGACACCCTTCTTGGCTGCGGCCTTGGTCACCTTAG
CTCCAGTCGGGTCCTTCTTGTCAACACTCTTGATCACACCAACAGCAACAGTCTGACGCATGTCCCTCACAGCAAACCTTCCAAGAGGCTTGGTCGGCAT
CATCTTAACCATACCTGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCTTTCCTGATCGTCTGTCAATCTTGGTCAACAGCTCTTGGAAC
TTAACAGCAATGTGAGAAGTGTGGCAATCCAACACTGGAGCATAACCATTTCCGATCTGACCAGGGTGGTTCATGATGATAACCTGGGAAGTGAAACTGG
CAGCACCCTTAGCAGGATCATCCTTGGAGTTTGAGGCAACATACCCACGCTTGATATCCTTCACAGCAACATTCTTAACATTGAACCCAACATTGTCACC
AGGAAGAGCTTCGGTCAAAGCTTCATGATGCATCTCAACAGACTTGACTTCAGTGGTCAACCCTGTTGGTCCGAAGGTCACAACCATACCAGGCTTGATG
ATACCTGTCTCAACACGTCCCACTGGCACAGTTCCAATACCACCGATCTTGTAAACATCCTGAAGTGGTAGACGGAGTGGCTTGTCTGTGGGTCTCTTTG
GCTCGTTGATCTGGTCAAGAGCTTCAAGAAGGGTTGGTCCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTGTCACCTTCGAATCCAGAGAT
TGGAACGAATGGGATTTTGTCTGGGTTGTATCCGACCTTCTTCAAGTATGAAGACACTTCCTTCACGATTTCCTCGTACCTACCCTTGGAGTATTTAGGG
GTGTAAGCATCATAGATAAAAATATATTGAATAACAAAACAACCAAGAATAATT