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Detailed information on CNT30101053


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 4e-73

BLAST vs NONCODE:
NONCQUT008675, E-value = 4e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Oryza rufipogonSetaria viridis38.1558.2790.54317forward
CNT30535563Oryza rufipogonEucalyptus grandis38.0338.7387.34316forward
CNT30629687Oryza rufipogonVigna unguiculata38.5116.288.12320forward
CNT30160120Oryza rufipogonPistacia vera40.1926.8789.52334forward
CNT30296842Oryza rufipogonTriticum aestivum64.7477.1990.33538forward
CNT30387246Oryza rufipogonTriticum turgidum40.9129.5491.18340forward
CNT30540416Oryza rufipogonBrassica napus38.6387.2386.92321forward
CNT30146188Oryza rufipogonMedicago truncatula40.9143.3185340forward
CNT30598511Oryza rufipogonFraxinus excelsior40.9152.2386.76340forward
CNT30132437Oryza rufipogonLolium perenne39.4727.2991.16328forward
CNT30685098Oryza rufipogonTriticum urartu41.1623.2792.98342forward
CNT30721805Oryza rufipogonTriticum spelta28.7616.5593.31239forward
CNT30369801Oryza rufipogonOryza glumipatula29.1257.0886.78242reverse complement
CNT30424894Oryza rufipogonPapaver somniferum40.1944.8986.23334forward
CNT30706335Oryza rufipogonPrunus avium40.1929.6989.52334forward
CNT30644842Oryza rufipogonCannabis sativa29.1259.986.36242forward
CNT3024873Oryza rufipogonPopulus trichocarpa39.4758.1686.89328forward
CNT3037774Oryza rufipogonCucumis melo33.4535.9688.49278forward
CNT30147611Oryza rufipogonBrachypodium distachyon21.5429.8394.97179forward
CNT30580076Oryza rufipogonEchinochloa crusgalli41.2825.9391.55343forward
CNT30176122Oryza rufipogonVigna angularis38.8728.5387.93323forward
CNT3050518Oryza rufipogonCucumis sativus29.8439.9486.29248forward

Expression of CNT30101053

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIILTIPASPFLRNLGSFSSSLPDRLSILVTTIPGLRTPVSTRPTGTVPIPPILYTS*

>peptide 2 (30 aa)
TVSTRIPQQPKGNNRTQNIQVFNRIEINEF*

Sequence

>CNT30101053
GCACTGTAAGTACTCGCATTCCACAACAACCGAAGGGCAACAATAGGACTCAGAACATCCAAGTTTTTAACCGAATAGAAATAAACGAGTTTTAAACGAC
TAACATAGTGCACATTGCGAGCAGATATTAACGGTCCATGCAACGAGTACCATGGCCGTGGGCAAAACTTAACGAACGCTAAGATATCTCAAATGCAGCC
AGCATAACCACCACTTCAACGATGCTCATTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCACCGGTTGGGTCCTTCTTCTCCACGTTCTTGATGACGCC
AACAGCCACCGTTTGCCTCATGTCACGCACGGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTTA
ACCATACCAGCATCACCGTTCTTGAGGAACTTGGGCTCCTTCTCCAGCTCCTTGCCGGATCGTCTGTCGATCTTGGTCACCACCATACCAGGCTTGAGGA
CACCAGTCTCAACACGACCCACAGGCACGGTACCAATACCGCCGATCTTGTACACGTCCTGAAGGGGAAGACGTAGGGGCTTGTCTGATGGCCTCTTGGG
CTCATTGATCTGGTCAAGAGCCTCAAGCAAGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAACCCAGAGATG
GGAACGAAGGGAATCTTGTCAGGATTGTAGCCGACCTTCTTCAGGTAGGATGAGACTTCCTTCACGATTTCATCATAACGGGCCTTGGAGTACTTGGGAG
TGGTGGCATCCATCTGTAACAGAAATAAGCA