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Detailed information on CNT30233904


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Brassica oleraceaOryza sativa96.456.1386.09884forward
CNT30677701Brassica oleraceaSetaria viridis74.3799.5686.07682forward
CNT30520962Brassica oleraceaSetaria italica93.8967.5386.3861forward
CNT30639730Brassica oleraceaNymphaea colorata61.8361.784.3567forward
CNT30546799Brassica oleraceaIpomoea triloba94.3370.4486.59865forward
CNT30274113Brassica oleraceaChenopodium quinoa51.2575.3286.38470forward
CNT30380230Brassica oleraceaManihot esculenta95.9736.2784.32880forward
CNT30194937Brassica oleraceaPisum sativum95.4287.5985.03875forward
CNT30224132Brassica oleraceaHordeum vulgare46.7862.5484.85429forward
CNT30387246Brassica oleraceaTriticum turgidum96.476.883.6884forward
CNT30564256Brassica oleraceaActinidia chinensis66.1952.1585.67607forward
CNT30440472Brassica oleraceaAegilops tauschii35.8855.2986.63329forward
CNT30246955Brassica oleraceaAvena sativa89.9746.7484.85825forward
CNT30449495Brassica oleraceaSaccharum spontaneum93.8970.7584.55861forward
CNT3011166Brassica oleraceaZea mays95.8662.1684.87879forward
CNT30350898Brassica oleraceaEragrostis tef93.8977.2985.6861forward
CNT30368495Brassica oleraceaSorghum bicolor79.2871.3484.73727forward
CNT3024422Brassica oleraceaPopulus trichocarpa67.581.1383.04619forward
CNT30603820Brassica oleraceaOryza punctata95.6481.2886.32877forward

Expression of CNT30233904

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPEGANVTTMPGLSIPVSTRPTGTVPIPPIL*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPNGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPDRLSILVRISENLTAMWEVWQSSTGA*

>peptide 3 (52 aa)
SMREVSSFGTLLDCSLGDLGTGWVLLVNTLDDTNSNRLSHVPNSETSQWWVL*

>peptide 4 (29 aa)
MVGTLRKSQQPWAWLESSSPYQHLHSSKT*

Sequence

>CNT30233904
AAAGCATGAGAGAAGTCTCATCATTTGGCACCCTTCTTGACTGCAGCCTTGGTGACCTTGGCACCGGTTGGGTCCTTCTTGTCAACACTCTTGATGACAC
CAACAGCAACCGTCTGTCTCATGTCCCTAACAGCGAAACGTCCCAATGGTGGGTACTCTGAGAAAGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTT
CACCATACCAGCATCTCCATTCTTCAAAAACTTAGGCTCCTTCTCGATCTCTTTACCAGATCGCCTGTCAATCTTGGTGAGGATCTCAGAAAACTTGACT
GCAATGTGGGAGGTGTGGCAATCAAGCACTGGGGCGTAACCGTTACCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTAGCAGCAC
CCTTGGCAGGGTCATCCTTAGAGTTGGATGCAACATACCCACGCTTAAGATCCTTGACGGCAACGTTCTTAACATTGAATCCGACGTTGTCACCTGGAAG
TGCCTCCACAAGAGACTCGTGGTGCATCTCAACGGACTTGACCTCAGTGGTCAACCCTGAAGGAGCGAATGTGACAACCATGCCGGGCTTGAGCATACCA
GTCTCAACACGACCCACTGGCACCGTTCCAATACCACCGATCTTGTAGACATCCTGAAGTGGTAGACGCAGGGGCTTGTCTGAAGGCCTCTTTGGCTCGT
TGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCGGAGATGGGGAC
GAATGGGATTTTGTCAGGGTTGTACCCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGGGTTGTT
GCATCCATCTGGAACAA