CANTATAdb - search

Detailed information on CNT30677701

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 2e-141

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535563	Setaria viridis	Eucalyptus grandis	99.56	83.58	86.36	682	forward
CNT30316757	Setaria viridis	Corylus avellana	99.56	56.93	87.83	682	forward
CNT30546799	Setaria viridis	Ipomoea triloba	99.56	55.54	87.98	682	forward
CNT30518094	Setaria viridis	Juglans regia	97.96	71.69	87.33	671	forward
CNT3021028	Setaria viridis	Citrullus lanatus	100.15	55.23	84.69	686	forward
CNT30727590	Setaria viridis	Corchorus capsularis	99.56	50.33	88.86	682	forward
CNT30380230	Setaria viridis	Manihot esculenta	99.71	28.15	85.94	683	forward
CNT30525464	Setaria viridis	Phaseolus vulgaris	85.11	103.19	81.99	583	forward
CNT30160120	Setaria viridis	Pistacia vera	99.56	54.87	88.12	682	forward
CNT30287202	Setaria viridis	Triticum aestivum	59.42	56.61	88.45	407	forward
CNT30387246	Setaria viridis	Triticum turgidum	97.96	58.3	87.33	671	forward
CNT30564256	Setaria viridis	Actinidia chinensis	89.64	52.75	87.46	614	forward
CNT3084148	Setaria viridis	Vigna radiata	73.87	31.06	83.99	506	forward
CNT30233904	Setaria viridis	Brassica oleracea	99.56	74.37	86.07	682	forward
CNT30246955	Setaria viridis	Avena sativa	99.56	38.64	90.91	682	forward
CNT30665783	Setaria viridis	Triticum dicoccoides	97.96	73.66	86.59	671	forward
CNT30310177	Setaria viridis	Camelina sativa	99.56	58.79	86.95	682	forward
CNT30614135	Setaria viridis	Arabis alpina	97.96	43.01	87.03	671	forward
CNT30598511	Setaria viridis	Fraxinus excelsior	59.71	62.83	86.31	409	forward
CNT30449495	Setaria viridis	Saccharum spontaneum	99.27	55.88	93.24	680	forward
CNT30685098	Setaria viridis	Triticum urartu	66.28	30.88	90.09	454	forward
CNT30480841	Setaria viridis	Arabidopsis halleri	56.79	62.64	87.15	389	forward
CNT30368770	Setaria viridis	Sorghum bicolor	94.89	90.78	92.77	650	forward
CNT30355521	Setaria viridis	Lactuca sativa	95.77	68.76	84.6	656	forward
CNT30427756	Setaria viridis	Papaver somniferum	97.96	51.46	86.14	671	forward
CNT30706337	Setaria viridis	Prunus avium	99.56	58.49	86.66	682	forward
CNT3037774	Setaria viridis	Cucumis melo	66.57	58.99	87.06	456	forward
CNT30594462	Setaria viridis	Eragrostis curvula	96.93	57.04	92.02	664	forward
CNT30176122	Setaria viridis	Vigna angularis	99.56	60.25	82.26	682	forward
CNT30113122	Setaria viridis	Ficus carica	71.82	59.28	86.79	492	forward
CNT3050294	Setaria viridis	Cucumis sativus	72.85	81.4	83.17	499	forward

Expression of CNT30677701

Peptides detected in this lncRNA

>peptide 1 (41 aa)
TQRMSPQPWAWWEPSSPYQHHRSSGTWAPSRAPCQIVCQSW*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRLRSFTATFFTLKPTLSPGRASWSASWCISTDFTSVVRPLGPKVTSIPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 3 (51 aa)
LRECLHNHGLGGNHLHHTSITVLQELGLLLELLARSSVNLGNKLGKLDSNV*

>peptide 4 (95 aa)
MVHLNRLHLSGQAAGTKGDKHTRLDDTSLYTTNRHSSNTTNLVHILKGETQGLVRRPLWLIDQVKSLKQCWALVPVQVGGPLNHVVALETRDGNK*

>peptide 5 (60 aa)
SENVSTTMGLVGTIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

Sequence

>CNT30677701
ACTCAGAGAATGTCTCCACAACCATGGGCTTGGTGGGAACCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCGAGCTCCTT
GCCAGATCGTCTGTCAATCTTGGTAACAAGCTCGGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGATCTGG
CCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGTACCCACGCTTGAGATCCT
TCACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCGGGAAGGGCCTCCTGGAGCGCCTCATGGTGCATCTCAACAGACTTCACCTCAGTGGTCAG
GCCGCTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGACACCAGTCTCTACACGACCAACAGGCACAGTTCCAATACCACCAATCTTGTACACATCC
TGAAGGGGGAGACGCAGGGGCTTGTCCGAAGGCCTCTTTGGCTCATTGATCAAGTCAAGAGCCTCAAGCAGTGTTGGGCCCTTGTACCAGTCCAGGTTGG
TGGACCTCTCAATCATGTTGTCGCCCTCGAAACCAGAGATGGGAACAAATGAATCTTGTCAGGGTTGTATCCAACCTTCTTGAGG