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Detailed information on CNT30310177


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Camelina sativaOryza sativa75.5255.6286.76876forward
CNT30677701Camelina sativaSetaria viridis58.7999.5686.95682forward
CNT30520962Camelina sativaSetaria italica7568.2486.44870forward
CNT30546799Camelina sativaIpomoea triloba74.5770.4486.71865forward
CNT30377782Camelina sativaArabidopsis thaliana60.7869.893.9705forward
CNT30618435Camelina sativaSesamum indicum3070.8885.06348forward
CNT30629544Camelina sativaVigna unguiculata34.1452.3885.35396forward
CNT30194937Camelina sativaPisum sativum75.4387.5985.49875forward
CNT30160120Camelina sativaPistacia vera74.1469.1987.09860forward
CNT30121467Camelina sativaPhyscomitrium patens39.0568.3383.22453forward
CNT30287202Camelina sativaTriticum aestivum41.1266.3486.58477forward
CNT30387246Camelina sativaTriticum turgidum75.5276.1183.9876forward
CNT30541587Camelina sativaBrassica napus91.1289.8889.51057forward
CNT30238010Camelina sativaBrassica oleracea90.8686.1189.661054forward
CNT30173274Camelina sativaTrifolium pratense71.1261.3486.3825forward
CNT30146334Camelina sativaMedicago truncatula53.5362.4784.86621forward
CNT30440878Camelina sativaAegilops tauschii20.7830.6690.46241forward
CNT3059230Camelina sativaArabidopsis lyrata90.0986.9495.221045forward
CNT3077051Camelina sativaBrassica juncea89.6690.1290.671040forward
CNT30614135Camelina sativaArabis alpina64.0547.6392.46743forward
CNT30598511Camelina sativaFraxinus excelsior41.2973.5885.18479forward
CNT30449495Camelina sativaSaccharum spontaneum75.2671.7385.91873forward
CNT3011166Camelina sativaZea mays70.0957.585.73813forward
CNT30685098Camelina sativaTriticum urartu45.3435.7888.21526forward
CNT30350898Camelina sativaEragrostis tef75.1778.2886.47872forward
CNT30480841Camelina sativaArabidopsis halleri34.2263.9395.47397forward
CNT30368770Camelina sativaSorghum bicolor61.0398.8886.02708forward
CNT30427751Camelina sativaPapaver somniferum74.4859.6786.46864forward
CNT30706337Camelina sativaPrunus avium71.9871.6186.47835forward
CNT3037774Camelina sativaCucumis melo39.4859.2586.24458forward
CNT30100761Camelina sativaOryza rufipogon30.661.9588.17355forward
CNT30580076Camelina sativaEchinochloa crusgalli33.5329.488.17389forward
CNT30496874Camelina sativaDigitaria exilis75.5278.1486.64876forward
CNT30116111Camelina sativaOryza nivara28.2837.4988.11328forward
CNT30603788Camelina sativaOryza punctata75.5274.3686.76876forward
CNT30113122Camelina sativaFicus carica42.4159.2884.35492forward
CNT3050294Camelina sativaCucumis sativus45.686.385.26529forward

Expression of CNT30310177

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMITWEVKLAAPLAGSSLELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIKPVSTRPTGTVPIPPIL*

>peptide 2 (98 aa)
MGVHFAPFLTAALVTLAPVGSFLSTLLMTPTATVCLMSLTAKRPNGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVKISENLTAM*

Sequence

>CNT30310177
TCCGACAAAGATAAGAGAATAAAATCCGCAGGAATGTCACAATAATCCATAAAAGGTTAAATTGGAAACACAATTTAAAGGAAAAAAAACAAAAAGCTCG
GATGCGCTAAGTAGCTCCGCCACCTCCGATCAAGAACCCAGTTCCGCGAACAACGCTCTGACGGAGAAGTAACGAAGCTGTAACACAAACAAGCGACCAA
ATACCAAACTAAAGGAAACAAACTAACAACATTCTTTGATTCATCTGCGGATAGAGTTTTGATAATGGGAGTTCACTTCGCACCCTTCTTGACTGCAGCC
TTGGTAACCTTGGCTCCAGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCGACTGCAACAGTCTGCCTCATGTCCCTCACGGCAAAACGTCCCAACG
GTGGGTACTCGGAGAAAGTCTCAACAACCATGGGCTTGGTAGGAGTCATCTTCACCATACCGGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAAT
CTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTGACTGCAATGTGAGAGGTGTGGCAATCGAGGACTGGGGCGTAACCGTTACCA
ATCTGTCCAGGGTGGTTCATGATGATAACCTGGGAGGTGAAGTTGGCTGCTCCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACATACCCTCTCTTAA
GATCCTTCACAGCAACATTCTTAACGTTGAACCCAACATTGTCACCAGGAAGCGCCTCAAGAAGAGACTCGTGGTGCATCTCAACAGACTTGACCTCAGT
GGTCAACCCTGTGGGGGCAAAGGTCACAACCATACCGGGCTTGATCAAACCAGTCTCAACACGTCCCACTGGCACCGTTCCAATACCACCAATCTTGTAG
ACATCCTGAAGTGGGAGACGAAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAA
GGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCAGAGATGGGCACAAACGGGATTTTGTCAGGGTTGTACCCAACCTTCTTCAGGTAGGAAGA
CACCTCCTTGATGATTTCATCGTACCTAGCCTTGGAGTACTTGGGGGTTGTGGCATCCAT