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Detailed information on CNT30146334


BLAST search results

BLAST vs Swiss-Prot:
sp|O24534|EF1A_VICFA, E-value = 2e-171

BLAST vs NONCODE:
NONGMAT001702, E-value = 1e-156

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Medicago truncatulaOryza sativa62.4739.4384.7621forward
CNT30672814Medicago truncatulaSetaria viridis65.961.4485.8655forward
CNT30520996Medicago truncatulaSetaria italica65.952.5786.11655forward
CNT30639730Medicago truncatulaNymphaea colorata63.2868.4481.88629forward
CNT30535563Medicago truncatulaEucalyptus grandis53.6265.3284.8533forward
CNT30316757Medicago truncatulaCorylus avellana49.0940.7388.52488forward
CNT30546799Medicago truncatulaIpomoea triloba63.9851.7984.59636forward
CNT30518094Medicago truncatulaJuglans regia62.4766.3583.74621forward
CNT30377782Medicago truncatulaArabidopsis thaliana63.9862.9784.43636forward
CNT30618377Medicago truncatulaSesamum indicum25.5568.190.55254forward
CNT30274113Medicago truncatulaChenopodium quinoa41.8566.6786.78416forward
CNT3021232Medicago truncatulaCitrullus lanatus62.3750.0885.16620forward
CNT30727585Medicago truncatulaCorchorus capsularis62.6846.2286.2623forward
CNT30380230Medicago truncatulaManihot esculenta62.4725.683.9621forward
CNT30525464Medicago truncatulaPhaseolus vulgaris47.3883.3682.59471forward
CNT30629525Medicago truncatulaVigna unguiculata36.8285.1291.26366forward
CNT30194937Medicago truncatulaPisum sativum67.5167.1790.76671forward
CNT30503993Medicago truncatulaNicotiana attenuata23.7485.8288.98236forward
CNT30712097Medicago truncatulaGlycine max42.3535.2987.17421forward
CNT30160120Medicago truncatulaPistacia vera65.5952.4585.43652forward
CNT30224132Medicago truncatulaHordeum vulgare42.1561.0886.87419forward
CNT30387246Medicago truncatulaTriticum turgidum62.0753.6181.52617forward
CNT30564256Medicago truncatulaActinidia chinensis45.1738.5787.08449forward
CNT30541587Medicago truncatulaBrassica napus64.9954.9384.37646forward
CNT30233993Medicago truncatulaBrassica oleracea62.4757.8284.22621forward
CNT30509820Medicago truncatulaSolanum lycopersicum21.1393.7587.14210forward
CNT30173274Medicago truncatulaTrifolium pratense67.7150.0493.61673forward
CNT30440472Medicago truncatulaAegilops tauschii32.954.9687.46327forward
CNT30246955Medicago truncatulaAvena sativa62.6835.386.84623forward
CNT30665783Medicago truncatulaTriticum dicoccoides60.8766.4181.98605forward
CNT30310177Medicago truncatulaCamelina sativa62.4753.5384.86621forward
CNT3059230Medicago truncatulaArabidopsis lyrata62.4751.6685.67621forward
CNT3075495Medicago truncatulaBrassica juncea64.9956.5284.52646forward
CNT30611975Medicago truncatulaArabis alpina64.9948.3983.59646forward
CNT30598015Medicago truncatulaFraxinus excelsior25.0549.691.57249forward
CNT30449969Medicago truncatulaSaccharum spontaneum62.6849.3786.2623forward
CNT30132437Medicago truncatulaLolium perenne62.3751.5881.45620forward
CNT3011166Medicago truncatulaZea mays63.2844.4885.06629forward
CNT30608730Medicago truncatulaGossypium raimondii44.5773.8386443forward
CNT30647369Medicago truncatulaRosa chinensis42.4546.5885.31422forward
CNT30127375Medicago truncatulaCorymbia citriodora47.4884.5986.65472forward
CNT30684514Medicago truncatulaTriticum urartu40.8552.3986.21406forward
CNT30721809Medicago truncatulaTriticum spelta27.3618.0387.13272forward
CNT30350898Medicago truncatulaEragrostis tef62.6855.9285.71623forward
CNT30480841Medicago truncatulaArabidopsis halleri29.7847.6786.82296forward
CNT30368495Medicago truncatulaSorghum bicolor62.6861.1487623forward
CNT30355521Medicago truncatulaLactuca sativa47.5949.5886.05473forward
CNT30151899Medicago truncatulaPrunus persica24.3521.9488.43242forward
CNT30426682Medicago truncatulaPapaver somniferum63.1847.588.22628forward
CNT30706337Medicago truncatulaPrunus avium61.2752.2385.22609forward
CNT3024315Medicago truncatulaPopulus trichocarpa61.8780.683.9615forward
CNT3037774Medicago truncatulaCucumis melo26.7634.4187.59266forward
CNT30148140Medicago truncatulaBrachypodium distachyon35.2192.1189.14350forward
CNT30101006Medicago truncatulaOryza rufipogon39.7456.7586.08395forward
CNT30579541Medicago truncatulaEchinochloa crusgalli22.5438.8991.07224forward
CNT30496833Medicago truncatulaDigitaria exilis63.3856.9687.3630forward
CNT30116376Medicago truncatulaOryza nivara25.2546.2286.85251forward
CNT30594462Medicago truncatulaEragrostis curvula62.6853.5286.2623forward
CNT30603788Medicago truncatulaOryza punctata62.6852.8985.07623forward
CNT30176122Medicago truncatulaVigna angularis63.9856.1883.02636forward
CNT30113122Medicago truncatulaFicus carica33.840.4885.42336forward
CNT30724026Medicago truncatulaLupinus angustifolius65.6945.3589.43653forward
CNT3050518Medicago truncatulaCucumis sativus33.753.9586.57335forward

Expression of CNT30146334

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSLTAKRPRGGYSAKVSTTMGLVGTILMIPASPFFKNLGSFSISLPDRLSILVTSSANFTAM*

>peptide 2 (93 aa)
MMMTWEVKLAASFAGSSLELDATKPRLRSFTATFLTLNPTLSPGRASVRASWCISTDLTSVVKPVGPKVTTIPGFTIPVSTRPTGTVPIPPIL*

Sequence

>CNT30146334
CAAAAGACTCTTAATAAAACCAAAATAACAGTACCATCAAAATCAAACAGACAAGAAAATTGACCATCGCCGATCAAGAACCCAGTTCTGTAAGTTTAGC
TGCATGAAATCGACAAAAACTTGAAAATAAAACTGGAAAAGAAATGAACTAAGACACTGAAATGATAAACTACTATAAAAGACAGCTTGTGCAGCAACCA
TGTTTTGACATCACTTCTTCTTGGCAGCAGCCTTGGTGACCTTGGCTCCGGTAGGATCCTTCTTCTCCACAGCCTTGATGACACCAACAGCAACAGTTTG
ACGCATGTCCCTGACAGCAAAACGTCCAAGAGGAGGATATTCAGCAAAGGTCTCAACCACCATGGGCTTGGTGGGAACCATCTTAATGATACCAGCATCA
CCGTTCTTCAAGAACTTGGGCTCCTTCTCAATCTCCTTACCAGATCGCCTGTCAATCTTGGTAACAAGTTCAGCAAACTTCACAGCAATGTGAGAGGTGT
GGCAATCGAGCACTGGTGCATATCCATTTCCAATCTGTCCAGGGTGGTTCATGATGATGACTTGGGAAGTGAAGTTGGCAGCTTCCTTTGCAGGGTCATC
CTTGGAGTTGGATGCAACGAAACCACGCTTGAGATCCTTCACGGCAACATTCTTAACATTGAATCCAACATTGTCTCCTGGAAGAGCTTCAGTGAGAGCC
TCGTGGTGCATCTCAACAGACTTAACTTCAGTTGTCAAACCAGTGGGTCCAAAAGTCACAACCATACCGGGCTTCACAATACCGGTCTCAACACGTCCAA
CTGGCACAGTTCCAATACCACCAATCTTGTAAACATCTTGCAATGGAAGCCTGAGGGGCTTGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTAGACCT
CTCAATCATGTTGTCACCTTCAAAACCAGAGATTGGAACAAATGGGATTTTGTCTGGGTTGTAACCAACCTTCTTCAAGTAGGATGAAACTTCC