« Back to Fraxinus excelsior search


Detailed information on CNT30598511


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 5e-109

BLAST vs NONCODE:
NONMEST004097, E-value = 6e-130

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Fraxinus excelsiorOryza sativa73.8930.5485.03481forward
CNT30677701Fraxinus excelsiorSetaria viridis62.8359.7186.31409forward
CNT30521010Fraxinus excelsiorSetaria italica73.8944.1386.49481forward
CNT30535563Fraxinus excelsiorEucalyptus grandis73.4358.5886.4478forward
CNT30316757Fraxinus excelsiorCorylus avellana69.2837.6587.36451forward
CNT30546678Fraxinus excelsiorIpomoea triloba101.5449.1485.02661forward
CNT30518292Fraxinus excelsiorJuglans regia70.5110086.06459forward
CNT30371709Fraxinus excelsiorArabidopsis thaliana50.2350.7887.46327forward
CNT30618435Fraxinus excelsiorSesamum indicum51.4668.2389.25335forward
CNT3021062Fraxinus excelsiorCitrullus lanatus72.6682.9886.05473forward
CNT30727588Fraxinus excelsiorCorchorus capsularis72.9635.3488475forward
CNT30380192Fraxinus excelsiorManihot esculenta69.2819.7788.03451forward
CNT30525464Fraxinus excelsiorPhaseolus vulgaris54.9963.3686.03358forward
CNT30629544Fraxinus excelsiorVigna unguiculata52.5345.2485.67342forward
CNT30160120Fraxinus excelsiorPistacia vera72.8138.1387.55474forward
CNT30637620Fraxinus excelsiorCapsicum annuum38.7113.1285.71252forward
CNT30287202Fraxinus excelsiorTriticum aestivum73.2766.3484.7477forward
CNT30387246Fraxinus excelsiorTriticum turgidum73.4341.5384.52478forward
CNT30564257Fraxinus excelsiorActinidia chinensis67.5938.3986.14440forward
CNT3084119Fraxinus excelsiorVigna radiata73.4326.8583.26478forward
CNT30541590Fraxinus excelsiorBrassica napus72.540.5885.81472forward
CNT30234068Fraxinus excelsiorBrassica oleracea70.3597.0384.93458forward
CNT30509820Fraxinus excelsiorSolanum lycopersicum32.8795.5489.72214forward
CNT30173274Fraxinus excelsiorTrifolium pratense66.3632.1285.65432forward
CNT30146188Fraxinus excelsiorMedicago truncatula54.6945.3583.99356forward
CNT30440878Fraxinus excelsiorAegilops tauschii38.5631.9386.85251forward
CNT30246955Fraxinus excelsiorAvena sativa74.0427.3184.85482forward
CNT30665783Fraxinus excelsiorTriticum dicoccoides65.7546.9885.05428forward
CNT30310177Fraxinus excelsiorCamelina sativa73.5841.2985.18479forward
CNT3059230Fraxinus excelsiorArabidopsis lyrata71.1238.5285.53463forward
CNT3078925Fraxinus excelsiorBrassica juncea73.4340.8286.19478forward
CNT30614135Fraxinus excelsiorArabis alpina73.4330.6483.68478forward
CNT30449234Fraxinus excelsiorSaccharum spontaneum73.1239.784.66476forward
CNT30132437Fraxinus excelsiorLolium perenne73.8940.0283.16481forward
CNT3011290Fraxinus excelsiorZea mays73.8934.9886.07481forward
CNT30608730Fraxinus excelsiorGossypium raimondii35.1838.1790.39229forward
CNT30232362Fraxinus excelsiorAnanas comosus42.448.3486.59276forward
CNT30647369Fraxinus excelsiorRosa chinensis43.9331.5785.31286forward
CNT30127375Fraxinus excelsiorCorymbia citriodora39.9446.5987.31260forward
CNT30624959Fraxinus excelsiorDaucus carota40.8678.2486.84266forward
CNT30685098Fraxinus excelsiorTriticum urartu72.532.1184.96472forward
CNT30350895Fraxinus excelsiorEragrostis tef70.240.4886457forward
CNT30480841Fraxinus excelsiorArabidopsis halleri45.9348.1585.28299forward
CNT30368387Fraxinus excelsiorSorghum bicolor68.0551.3384.88443forward
CNT30355521Fraxinus excelsiorLactuca sativa69.8947.6984.4455forward
CNT30427598Fraxinus excelsiorPapaver somniferum71.1233.8583.59463forward
CNT30706337Fraxinus excelsiorPrunus avium72.3540.3985.99471forward
CNT3052982Fraxinus excelsiorAmborella trichopoda47.4723.6287.06309forward
CNT3024873Fraxinus excelsiorPopulus trichocarpa58.0667.0288.62378forward
CNT3037774Fraxinus excelsiorCucumis melo61.7552.0185.32402forward
CNT30147611Fraxinus excelsiorBrachypodium distachyon30.5733.1787.44199forward
CNT30101053Fraxinus excelsiorOryza rufipogon52.2340.9186.76340forward
CNT30496874Fraxinus excelsiorDigitaria exilis73.8942.9187.11481forward
CNT30116111Fraxinus excelsiorOryza nivara50.6937.7186.36330forward
CNT30594443Fraxinus excelsiorEragrostis curvula72.6640.7486.26473forward
CNT30603820Fraxinus excelsiorOryza punctata73.7344.4986.04480forward
CNT30176122Fraxinus excelsiorVigna angularis70.3540.4684.28458forward
CNT30113122Fraxinus excelsiorFicus carica54.0742.4189.77352forward
CNT30724009Fraxinus excelsiorLupinus angustifolius72.0443.1985.5469forward
CNT3050294Fraxinus excelsiorCucumis sativus61.1464.9385.18398forward

Expression of CNT30598511

Peptides detected in this lncRNA

>peptide 1 (58 aa)
GDKASSSLGRIILGVGSHITTLEILDSNILDIESNIITRESLLKGFVVHLNRLNFSAT*

Sequence

>CNT30598511
TGGGAGATAAAGCTAGCAGCTCCCTTGGCAGGATCATCCTTGGAGTTGGAAGCCACATAACCACGCTTGAGATCCTTGACAGCAACATTCTTGACATTGA
ATCCAACATTATCACCAGGGAGAGCCTCCTGAAGGGCTTCGTGGTGCATCTCAACAGACTTAACTTCAGTGCCACATAACCACGCTTGAGATCCTTGACA
GCAACATTCTTGACATTGAACCCAACATTATCACCGGGGAGAGCCTCCTGAAGGGCTTCGTGGTGCATCTCAACAGACTTAACTTCAGTGGTCAAACCAG
AGGGACCGAAAGTCACAACCATACCAGGCTTGATGACACCAGTCTCCACACGACCCACTGGGACAGTACCAATACCACCAATCTTGTAGACATCCTGAAG
TGGGAGACGAAGAGGCTTATCCGAGGGCCTCTTGGGCTCCTGAATCTGGTCGAGGGCTTCTAGCAGGGTTGGGCCCTTGTACCAGTCGAGGTTGGTGGAC
CTCTCAATCATGTTGTCACCCTCAAAACCAGAAATGGGGACGAATGGAATCTTGTCAGGGTTGTAACCAACCTTTTTGATGTAGGAGGAAACTTCCTTCA
CGATTTCATCATATCTAGGCTTGGAGTACTTCGGCGTGGTGGCATCCATCT