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Detailed information on CNT30449495


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Saccharum spontaneumOryza sativa72.3155.8791.02880forward
CNT30677701Saccharum spontaneumSetaria viridis55.8899.2793.24680forward
CNT30521308Saccharum spontaneumSetaria italica72.7279.2392.2885forward
CNT30535563Saccharum spontaneumEucalyptus grandis64.5996.3284.99786forward
CNT30316757Saccharum spontaneumCorylus avellana58.8359.7787.43716forward
CNT30546799Saccharum spontaneumIpomoea triloba70.9970.3686.81864forward
CNT30518094Saccharum spontaneumJuglans regia67.9588.3585.37827forward
CNT3021028Saccharum spontaneumCitrullus lanatus64.8363.5383.14789forward
CNT30727590Saccharum spontaneumCorchorus capsularis71.2463.9986.27867forward
CNT30380230Saccharum spontaneumManihot esculenta71.7335.9984.88873forward
CNT30525464Saccharum spontaneumPhaseolus vulgaris47.9103.1981.65583forward
CNT30194937Saccharum spontaneumPisum sativum71.9887.6984.59876forward
CNT30712097Saccharum spontaneumGlycine max3535.7185.45426forward
CNT30160120Saccharum spontaneumPistacia vera72.6471.1286.54884forward
CNT30387246Saccharum spontaneumTriticum turgidum72.3176.4687.05880forward
CNT3084148Saccharum spontaneumVigna radiata45.7734.1985.64557forward
CNT30541590Saccharum spontaneumBrassica napus70.573.7784.85858forward
CNT30233904Saccharum spontaneumBrassica oleracea70.7593.8984.55861forward
CNT30173274Saccharum spontaneumTrifolium pratense69.1962.685.39842forward
CNT30246955Saccharum spontaneumAvena sativa72.3149.8689.32880forward
CNT30665783Saccharum spontaneumTriticum dicoccoides68.8691.9985.92838forward
CNT30310177Saccharum spontaneumCamelina sativa71.7375.2685.91873forward
CNT3059230Saccharum spontaneumArabidopsis lyrata71.7372.6385.45873forward
CNT3079066Saccharum spontaneumBrassica juncea71.7373.1284.99873forward
CNT30614135Saccharum spontaneumArabis alpina60.1546.9286.07732forward
CNT30132437Saccharum spontaneumLolium perenne72.3173.2186.25880forward
CNT3011166Saccharum spontaneumZea mays72.2362.1690.67879forward
CNT30127375Saccharum spontaneumCorymbia citriodora45.1198.3985.61549forward
CNT30685098Saccharum spontaneumTriticum urartu42.9735.5889.87523forward
CNT30350898Saccharum spontaneumEragrostis tef72.879.5390.29886forward
CNT30368495Saccharum spontaneumSorghum bicolor85.29101.8690.661038forward
CNT30355521Saccharum spontaneumLactuca sativa54.7269.8184.83666forward
CNT30427598Saccharum spontaneumPapaver somniferum71.4163.5284.35869forward
CNT30706337Saccharum spontaneumPrunus avium68.4571.4485.59833forward
CNT3037774Saccharum spontaneumCucumis melo38.6260.887.23470forward
CNT30496874Saccharum spontaneumDigitaria exilis72.9779.2190.65888forward
CNT30594443Saccharum spontaneumEragrostis curvula72.4775.9790.7882forward
CNT30603820Saccharum spontaneumOryza punctata72.3181.5691.48880forward
CNT30176122Saccharum spontaneumVigna angularis70.1775.4483.14854forward
CNT30724026Saccharum spontaneumLupinus angustifolius69.5258.7585.7846forward
CNT3050294Saccharum spontaneumCucumis sativus39.1177.6585.5476forward

Expression of CNT30449495

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRFRSFTATFLTLKPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGTIFTIPASPFLRNLGSFSSSLPDRLSILVMSSANLTAMCEVWQSSTGA*

>peptide 3 (50 aa)
CNRNLNTARQVRYGRANHQLFNNSKIGKQAITATRVVTKLITMAHTLCSI*

>peptide 4 (33 aa)
MFDIKITEMSLNSTLVLTKIKVLNRPDRHCQHI*

>peptide 5 (54 aa)
MVHLNRLNLSSKATGTEGNHHTGLDDTSLNTPNRNSSNTTNLVHILKGETQGLV*

Sequence

>CNT30449495
GTGCAACAGAAATTTAAACACTGCTAGACAGGTAAGGTATGGACGAGCGAATCATCAGCTATTTAATAACAGCAAAATAGGTAAACAGGCGATCACTGCA
ACAAGGGTAGTAACAAAACTCATAACCATGGCTCATACCCTATGTTCGATATAAAAATAACAGAAATGAGTCTTAATAGCACCCTGGTTTTAACGAAAAT
AAAAGTTCTAAATCGACCAGACAGACATTGCCAACACATTTAGTTGCTCACGCAATAACAGCAATAACGTGAACAAGACGAGATATTTTAAGCTCCCACT
AGGTATCCCTCAAGCAAACACAGAACCAGCCAGACACCTCATTTCTTCTTGGCGGCAGCCTTTGTCACCTTGGCTCCAGTTGGGTCCTTCTTCTCCACAC
TCTTGATGACTCCGACAGCCACCGTTTGCCTCATGTCCCGCACAGCAAAGCGACCAAGAGGAGGATATTCAGAGAAGGTCTCCACCACCATGGGCTTAGT
GGGAACCATCTTCACCATACCAGCATCACCGTTCTTAAGGAATTTGGGCTCCTTCTCAAGCTCCTTGCCAGACCGCCTATCAATCTTGGTAATGAGCTCA
GCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGCGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGA
AGCTAGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACATACCCACGCTTCAGATCCTTCACAGCAACATTCTTAACGTTGAAGCCAACGTT
GTCACCAGGAAGAGCCTCCTGGAGAGCCTCATGGTGCATCTCAACAGACTTAACCTCAGTAGTAAGGCCACTGGGACCGAAGGTAACCACCATACCGGGC
TTGATGACACCAGTCTCAACACGCCCAACAGGAACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAAGGCC
TCTTTGGCTCATTGATCAAGTCCAGAGCCTCAAGCAGGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCGAAACC
AGAGATGGGAACAAAGTGGATCTTGTCAGGGTTGTATCCAACCTTCTTCAGGTAGGAAGAGACTTCCTTCACAATCTCATCATAACGGGCCTTCGAGTAC
TTGGGTGTGGTGGCATC