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Detailed information on CNT30535563


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 5e-180

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Eucalyptus grandisOryza sativa97.1850.3585.88793forward
CNT30677701Eucalyptus grandisSetaria viridis83.5899.5686.36682forward
CNT30520941Eucalyptus grandisSetaria italica95.5969.487.56780forward
CNT30639730Eucalyptus grandisNymphaea colorata70.966387.22579forward
CNT30316757Eucalyptus grandisCorylus avellana92.1662.7785.77752forward
CNT30546799Eucalyptus grandisIpomoea triloba96.5764.1785.91788forward
CNT30518094Eucalyptus grandisJuglans regia97.6785.1584.82797forward
CNT30371709Eucalyptus grandisArabidopsis thaliana78.5599.5384.71641forward
CNT30618377Eucalyptus grandisSesamum indicum47.67104.2984.32389forward
CNT30274113Eucalyptus grandisChenopodium quinoa53.4369.8785.09436forward
CNT3021232Eucalyptus grandisCitrullus lanatus97.5564.384.17796forward
CNT30727590Eucalyptus grandisCorchorus capsularis94.4956.988.2771forward
CNT30380230Eucalyptus grandisManihot esculenta97.9232.9384.48799forward
CNT30525464Eucalyptus grandisPhaseolus vulgaris69.73100.7182.95569forward
CNT30629544Eucalyptus grandisVigna unguiculata48.5352.3884.85396forward
CNT30194937Eucalyptus grandisPisum sativum96.5778.8882.74788forward
CNT30503993Eucalyptus grandisNicotiana attenuata28.5584.7387.98233forward
CNT30712097Eucalyptus grandisGlycine max43.6329.8486.8356forward
CNT30160120Eucalyptus grandisPistacia vera97.9264.2887.48799forward
CNT30637620Eucalyptus grandisCapsicum annuum3113.1886.96253forward
CNT30287202Eucalyptus grandisTriticum aestivum57.3565.0986.75468forward
CNT30224132Eucalyptus grandisHordeum vulgare35.5442.2786.9290forward
CNT30387246Eucalyptus grandisTriticum turgidum97.0668.8184.09792forward
CNT30564256Eucalyptus grandisActinidia chinensis75.2552.7585.83614forward
CNT3084148Eucalyptus grandisVigna radiata71.9436.0386.37587forward
CNT30541587Eucalyptus grandisBrassica napus97.0667.3584.97792forward
CNT30233993Eucalyptus grandisBrassica oleracea97.0673.7484.34792forward
CNT30173274Eucalyptus grandisTrifolium pratense91.7955.6984.78749forward
CNT30146334Eucalyptus grandisMedicago truncatula65.3253.6284.8533forward
CNT30440472Eucalyptus grandisAegilops tauschii40.3255.2986.93329forward
CNT30246955Eucalyptus grandisAvena sativa92.1642.6185.37752forward
CNT30665783Eucalyptus grandisTriticum dicoccoides85.9176.9584.02701forward
CNT30310418Eucalyptus grandisCamelina sativa96.6968.0285.68789forward
CNT3059230Eucalyptus grandisArabidopsis lyrata96.9465.8184.7791forward
CNT3079066Eucalyptus grandisBrassica juncea97.0666.3385.23792forward
CNT30614135Eucalyptus grandisArabis alpina91.5447.8884.74747forward
CNT30598511Eucalyptus grandisFraxinus excelsior58.5873.4386.4478forward
CNT30449495Eucalyptus grandisSaccharum spontaneum96.3264.5984.99786forward
CNT30132437Eucalyptus grandisLolium perenne98.1666.6482.15801forward
CNT3011166Eucalyptus grandisZea mays95.7155.2384.64781forward
CNT30608730Eucalyptus grandisGossypium raimondii54.5374.1785.17445forward
CNT30647369Eucalyptus grandisRosa chinensis41.337.286.94337forward
CNT30127375Eucalyptus grandisCorymbia citriodora68.1499.6491.73556forward
CNT30685098Eucalyptus grandisTriticum urartu64.9536.0585.09530forward
CNT30350898Eucalyptus grandisEragrostis tef96.270.4785.48785forward
CNT30480841Eucalyptus grandisArabidopsis halleri48.6563.9382.62397forward
CNT30368770Eucalyptus grandisSorghum bicolor87.7510085.34716forward
CNT30355521Eucalyptus grandisLactuca sativa87.8775.1682.71717forward
CNT30151899Eucalyptus grandisPrunus persica36.5227.0285.91298forward
CNT30427598Eucalyptus grandisPapaver somniferum95.5957.0284.23780forward
CNT30706337Eucalyptus grandisPrunus avium97.7968.4484.59798forward
CNT3052982Eucalyptus grandisAmborella trichopoda40.5625.3185.8331forward
CNT3024315Eucalyptus grandisPopulus trichocarpa71.9476.9385.01587forward
CNT3037774Eucalyptus grandisCucumis melo57.660.884.89470forward
CNT30148140Eucalyptus grandisBrachypodium distachyon43.3893.1687.85354forward
CNT30101053Eucalyptus grandisOryza rufipogon38.7338.0387.34316forward
CNT30580076Eucalyptus grandisEchinochloa crusgalli49.5130.5486.39404forward
CNT30496874Eucalyptus grandisDigitaria exilis95.7169.6787.07781forward
CNT30116111Eucalyptus grandisOryza nivara40.8138.0685.59333forward
CNT30594443Eucalyptus grandisEragrostis curvula97.0668.2285.73792forward
CNT30603820Eucalyptus grandisOryza punctata96.8173.2285.57790forward
CNT30176122Eucalyptus grandisVigna angularis95.4768.8283.44779forward
CNT30113122Eucalyptus grandisFicus carica60.2959.2886.18492forward
CNT30724026Eucalyptus grandisLupinus angustifolius93.8753.1984.86766forward
CNT3050294Eucalyptus grandisCucumis sativus60.5480.5984.21494forward

Expression of CNT30535563

Peptides detected in this lncRNA

>peptide 1 (49 aa)
GLTHVPHSKTTKWRILGESLDNHGLGGNHLHHPRVTVLQELGLLLKLLT*

>peptide 2 (62 aa)
RSDACPSQQNDQVEDTRRKSRQPWAWWESSSPSQSHRSSRTWAPSQAPYLIACRSWSTAQKT*

>peptide 3 (65 aa)
MSLTAKRPSGGYSEKVSTTMGLVGIIFTIPESPFFKNLGSFSSSLPDRLSILVNSSENLTAIWEV*

>peptide 4 (38 aa)
MGGVTVKNRGISISNLARVIHDNNLGGEVGCFLGGIVL*

Sequence

>CNT30535563
CGGTCTGACGCATGTCCCTCACAGCAAAACGACCAAGTGGAGGATACTCGGAGAAAGTCTCGACAACCATGGGCTTGGTGGGAATCATCTTCACCATCCC
AGAGTCACCGTTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTACCTGATCGCCTGTCGATCTTGGTCAACAGCTCAGAAAACTTGACAGCAATATGG
GAGGTGTGACAGTCAAGAACAGGGGCATATCCATTTCCAATCTGGCCAGGGTGATTCATGATAATAACTTGGGAGGTGAAGTTGGCTGCTTCCTTGGCGG
GATCGTCCTTTGAGTTGGAAGCAACATAACCACGCTTGAGATCCTTGACAGCAACATTCTTCACGTTAAACCCAACGTTGTCACCTGGAAGGGCCTCCTG
GAGAGCCTCATGGTGCATCTCCACGGACTTAACTTCAGTGGTCAATCCAGAGGGACCAAAAGTGACAACCATCCCAGGCTTAATTAAACCAGTCTCAACA
CGGCCGACAGGGACAGTTCCGATACCACCAATCTTGTACACGTCCTGAAGTGGGAGACGGAGGGGCTTGTCAGATGGTCTCTTGGGCTCATTAATCTGGT
CGAGGGCCTCGAGCAATGTTGGACCCTTGTACCAGTCAAGGTTGGTAGACCTCTCAATCATGTTGTCTCCCTCGAATCCGGAGATGGGGACAAATGGAAT
CTTGTCAGGGTTATATCCCACCTTCTTCAGGTAAGAAGAGACTTCCTTAACAATTTCATCATACCTAGCCTTGGAGTACTTGGGGGTGGTGGCATCCATC
TGTCACAATAGATGCC