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Detailed information on CNT30564256


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 3e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Actinidia chinensisOryza sativa52.3238.6787.19609forward
CNT30677701Actinidia chinensisSetaria viridis52.7589.6487.46614forward
CNT30520765Actinidia chinensisSetaria italica52.4930.0788.54611forward
CNT30639730Actinidia chinensisNymphaea colorata43.9955.7185.74512forward
CNT30535563Actinidia chinensisEucalyptus grandis52.7575.2585.83614forward
CNT30316757Actinidia chinensisCorylus avellana52.7551.2587.46614forward
CNT30546799Actinidia chinensisIpomoea triloba52.755085.99614forward
CNT30518094Actinidia chinensisJuglans regia52.4965.2888.05611forward
CNT30371709Actinidia chinensisArabidopsis thaliana50.0990.5387.14583forward
CNT30618435Actinidia chinensisSesamum indicum28.2667.0186.02329forward
CNT30274113Actinidia chinensisChenopodium quinoa40.2975.1685.93469forward
CNT3021235Actinidia chinensisCitrullus lanatus50.9584.5985.67593forward
CNT30727585Actinidia chinensisCorchorus capsularis52.4945.3386.91611forward
CNT30380230Actinidia chinensisManihot esculenta52.7525.3186.16614forward
CNT30525464Actinidia chinensisPhaseolus vulgaris50.09103.1982.16583forward
CNT30629525Actinidia chinensisVigna unguiculata33.1689.7786.01386forward
CNT30194937Actinidia chinensisPisum sativum52.3260.9683.91609forward
CNT30712080Actinidia chinensisGlycine max29.2146.9686.47340forward
CNT30224132Actinidia chinensisHordeum vulgare23.3739.6588.6272forward
CNT30387246Actinidia chinensisTriticum turgidum47.6848.2285.95555forward
CNT30541590Actinidia chinensisBrassica napus52.1552.1986.16607forward
CNT30233904Actinidia chinensisBrassica oleracea52.1566.1985.67607forward
CNT30173274Actinidia chinensisTrifolium pratense52.7545.6584.69614forward
CNT30146334Actinidia chinensisMedicago truncatula38.5745.1787.08449forward
CNT30440472Actinidia chinensisAegilops tauschii26.251.2688.2305forward
CNT30246955Actinidia chinensisAvena sativa52.7534.7986.81614forward
CNT30310418Actinidia chinensisCamelina sativa52.8453.0287.15615forward
CNT3059230Actinidia chinensisArabidopsis lyrata52.4150.7586.56610forward
CNT3077042Actinidia chinensisBrassica juncea52.1550.4286.66607forward
CNT30614135Actinidia chinensisArabis alpina51.6338.5385.86601forward
CNT30449969Actinidia chinensisSaccharum spontaneum52.7548.6587.13614forward
CNT3011166Actinidia chinensisZea mays52.4943.2187.89611forward
CNT30608730Actinidia chinensisGossypium raimondii38.2374.1787.19445forward
CNT30651330Actinidia chinensisRosa chinensis20.2753.5188.14236forward
CNT30127375Actinidia chinensisCorymbia citriodora44.2492.2985.63515forward
CNT30624959Actinidia chinensisDaucus carota26.289.7185.57305forward
CNT30350898Actinidia chinensisEragrostis tef52.2354.5887.5608forward
CNT30480841Actinidia chinensisArabidopsis halleri33.6863.1287.5392forward
CNT30368770Actinidia chinensisSorghum bicolor52.7585.7587.62614forward
CNT30355521Actinidia chinensisLactuca sativa51.7263.184.22602forward
CNT30151899Actinidia chinensisPrunus persica29.0430.6486.09338forward
CNT30427756Actinidia chinensisPapaver somniferum52.7547.0984.69614forward
CNT30706337Actinidia chinensisPrunus avium52.7552.6685.02614forward
CNT3024315Actinidia chinensisPopulus trichocarpa43.7366.7185.85509forward
CNT30148140Actinidia chinensisBrachypodium distachyon25.1777.1190.78293forward
CNT30496874Actinidia chinensisDigitaria exilis52.2354.2490.13608forward
CNT30594462Actinidia chinensisEragrostis curvula52.2352.2387.17608forward
CNT30603788Actinidia chinensisOryza punctata52.2351.6187.66608forward
CNT30113122Actinidia chinensisFicus carica42.2759.2886.99492forward
CNT30724026Actinidia chinensisLupinus angustifolius52.7542.6483.71614forward

Expression of CNT30564256

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLKPTLSPGSAS*

>peptide 2 (48 aa)
HRRSSTQFWERLLNKETSKLRQTWQNHQSISVEIVTNTEFSGKTLFFK*

>peptide 3 (81 aa)
MTPTATVCLMSLTAKRPSGGYEAKVSTTMGLVGIIFTIPASPFFKNLGSFSSSFPDRLSILVSSSANLTAMWEVWQSRTGA*

>peptide 4 (41 aa)
MMMTWEESSSPYQHRRFSRTWAPSQAPFQIACQSWSAARQT*

>peptide 5 (31 aa)
MSSASRRVGPLYQSRFVDLSIMLSPSKPEMGT

Sequence

>CNT30564256
GCCACCGCCGGTCAAGCACCCAGTTCTGGGAACGGCTGCTCAACAAAGAAACCAGTAAACTAAGACAAACATGGCAAAACCACCAATCTATATCAGTAGA
AATTGTAACTAATACCGAGTTCTCGGGAAAAACTTTATTCTTCAAATAGTAGACTCCATCTGCGGTAGTAGGAACCTCCTCCACGGTTCACTTGGCACCC
TTCTTGGCAGCAGCCTTGGTGACCTTGGCTCCGGTAGGATCCTTCTTCTCAACACTCTTGATGACACCAACAGCCACGGTCTGCCTCATGTCCCTAACAG
CGAAACGACCGAGTGGAGGGTACGAGGCGAAAGTCTCCACCACCATGGGCTTGGTAGGAATCATCTTCACCATACCAGCATCGCCATTTTTCAAGAACTT
GGGCTCCTTCTCAAGCTCCTTTCCGGATCGCCTGTCAATCTTGGTCAGCAGCTCGGCAAACTTGACGGCTATGTGGGAGGTGTGGCAGTCGAGAACCGGG
GCATAACCGTTTCCAATCTGCCCTGGGTGGTTCATGATGATGACCTGGGAGGAATCATCTTCACCATACCAGCATCGCCGTTTTTCAAGAACTTGGGCTC
CTTCTCAAGCTCCTTTCCAGATCGCCTGTCAATCTTGGTCAGCAGCTCGGCAAACTTGACGGCTATGTGGGAGGTGTGGCAGTCGAGAACCGGGGCATAA
CCGTTTCCAATCTGCCCTGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTAGCAGCCTCCTTGGCAGGGTCATCCTTAGAGTTGGAAGCCACAAATC
CACGCTTGAGATCCTTCACGGCAACGTTCTTCACGTTGAAGCCAACGTTGTCACCTGGAAGCGCCTCCTGAAGAGCTTCGTGGTGCATCTCAACAGACTT
GACTTCAGTTGTGAGTCCGGTGGGCCCAAAGGTCACAACCATACCGGGCTTGATAATACCAGTCTCAACACGTCCCACTGGGACAGTTCCAATGCCACCA
ATCTTGTAGACATCCTGAAGTGGGAGACGGAGAGGCTTGTCCGAGGGCCTCTTGGGCTCGTTAATCATGTCAAGCGCGTCGAGGAGGGTTGGGCCCTTGT
ACCAGTCAAGGTTTGTAGATCTCTCAATCATGTTGTCTCCTTCAAAACCAGAGATGGGGACAAA