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Detailed information on CNT3011166


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONMEST004097, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Zea maysOryza sativa62.2355.8790880forward
CNT30672814Zea maysSetaria viridis5066.3292.79707forward
CNT30520765Zea maysSetaria italica62.7343.6593.01887forward
CNT30639730Zea maysNymphaea colorata38.1958.7685.93540forward
CNT30535563Zea maysEucalyptus grandis55.2395.7184.64781forward
CNT30316757Zea maysCorylus avellana52.7662.2787.13746forward
CNT30546799Zea maysIpomoea triloba61.1770.4486.24865forward
CNT30518094Zea maysJuglans regia60.8291.8885.12860forward
CNT30371709Zea maysArabidopsis thaliana43.6495.8187.2617forward
CNT3021028Zea maysCitrullus lanatus58.2766.3483.37824forward
CNT30727590Zea maysCorchorus capsularis61.8864.5885.94875forward
CNT30380230Zea maysManihot esculenta62.3136.3185.47881forward
CNT30525464Zea maysPhaseolus vulgaris41.23103.1982.16583forward
CNT30629525Zea maysVigna unguiculata27.389.7787.05386forward
CNT30194937Zea maysPisum sativum62.3888.2983.33882forward
CNT30712097Zea maysGlycine max29.8435.3785.31422forward
CNT30160120Zea maysPistacia vera62.5271.1286.99884forward
CNT30224132Zea maysHordeum vulgare30.262.2488.52427forward
CNT30387246Zea maysTriticum turgidum62.5276.887.78884forward
CNT30564256Zea maysActinidia chinensis43.2152.4987.89611forward
CNT3084148Zea maysVigna radiata41.0235.684.66580forward
CNT30541590Zea maysBrassica napus62.0975.4984.17878forward
CNT30233904Zea maysBrassica oleracea62.1695.8684.87879forward
CNT30173274Zea maysTrifolium pratense59.2662.385.08838forward
CNT30146334Zea maysMedicago truncatula44.4863.2885.06629forward
CNT30440472Zea maysAegilops tauschii23.2755.2991.19329forward
CNT30246955Zea maysAvena sativa62.5250.0889.14884forward
CNT30310177Zea maysCamelina sativa57.570.0985.73813forward
CNT3059230Zea maysArabidopsis lyrata62.0973.0484.4878forward
CNT3077042Zea maysBrassica juncea62.0972.9284.97878forward
CNT30614135Zea maysArabis alpina52.6947.7684.97745forward
CNT30449495Zea maysSaccharum spontaneum62.1672.2390.67879forward
CNT30132437Zea maysLolium perenne62.5973.6386.44885forward
CNT30608730Zea maysGossypium raimondii31.827586.22450forward
CNT30127375Zea maysCorymbia citriodora36.9993.7386.42523forward
CNT30685098Zea maysTriticum urartu37.3435.9290.34528forward
CNT30350898Zea maysEragrostis tef62.0978.8290.32878forward
CNT30480841Zea maysArabidopsis halleri28.0863.9386.9397forward
CNT30368495Zea maysSorghum bicolor52.1272.3391.32737forward
CNT30355521Zea maysLactuca sativa48.0971.2883.38680forward
CNT30427598Zea maysPapaver somniferum61.663.6784.85871forward
CNT30706337Zea maysPrunus avium59.0571.6186.35835forward
CNT3024428Zea maysPopulus trichocarpa44.2782.0485.94626forward
CNT3037774Zea maysCucumis melo33.2460.887.02470forward
CNT30148140Zea maysBrachypodium distachyon25.8196.0591.23365forward
CNT30101006Zea maysOryza rufipogon28.2257.3390.98399forward
CNT30496874Zea maysDigitaria exilis62.6679.0492.21886forward
CNT30594443Zea maysEragrostis curvula62.5976.2389.83885forward
CNT30603820Zea maysOryza punctata62.4581.8490.37883forward
CNT30176122Zea maysVigna angularis60.1875.1881.9851forward
CNT30113122Zea maysFicus carica34.8759.485.8493forward
CNT30724026Zea maysLupinus angustifolius59.0557.9985.51835forward
CNT3050294Zea maysCucumis sativus37.285.8183.46526forward

Expression of CNT3011166

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MTPVSTRPTGTVPIPPILYTSWRGRRRGLSEGLLGSVIWSRASSRVGPLYQSRLVDLSIMLSPSKPEMGTKAILSGLYPTFLR*

>peptide 2 (47 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSLTATFFTLKPTLSPGRAS*

>peptide 3 (72 aa)
MSRTANLPRGGYAENVSTTMGLVGIIFTIPASPFFRNFGSFSSSLPERLSILVMSSANLTAMWEVWQSSTGA*

>peptide 4 (38 aa)
MSPPPWAWWVSSSPYQHHRSSGTLAPSQAPCQSACRSW*

>peptide 5 (35 aa)
MRLPSQSLHNVPWSIWEWLHPSKKQNTITLIIHGT*

Sequence

>CNT3011166
AACAATGCCAAAAGGTTAACATATAGCTCTTACAGCATTCTTGTATTGCAGAAGGTGAAATAGCAACAAGGTACCAAATAAATAGATAAAAGTGCACAGG
CTAACAGAGCTCAACAGTTCACACAATAACAGCAACGACCACAAACAAAACTTGTAATGATGAAAACTAGGTATTGCTAAAGCAGGCGCAGGATCGCATC
ATTTCTTCTTGGCAGCAGCCTTGGTCACCTTGGCGCCGGTTGGGTCCTTCTTCTCCACACTCTTGATAACTCCAACAGCAACCGTCTGCCTCATGTCACG
GACAGCAAACCTACCAAGGGGAGGATACGCTGAGAATGTCTCCACCACCATGGGCTTGGTGGGTATCATCTTCACCATACCAGCATCACCGTTCTTCAGG
AACTTTGGCTCCTTCTCAAGCTCCTTGCCAGAGCGCCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCGATGTGGGAGGTGTGGCAGTCCAGCA
CTGGGGCATAGCCGTTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGA
GGCCACAAACCCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGAGCCTCCTGAAGCGCCTCGTGGTGCATC
TCAACAGACTTCACCTCGGTAGTCAGGCCAGTTGGACCAAAGGTGACAACCATACCAGGCTTGATGACACCAGTCTCCACACGACCAACCGGTACAGTTC
CAATACCACCAATCTTGTACACATCCTGGAGGGGCAGACGCAGGGGCTTGTCTGAAGGCCTCTTGGGCTCGGTGATCTGGTCAAGAGCCTCAAGCAGGGT
TGGGCCTTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAAATGGGAACAAAGGCAATCTTATCAGGGTTGTACCCA
ACTTTCTTGAGGTAGGATGAGACTTCCTTCACAATCTCTTCATAACGTGCCTTGGAGTATTTGGGAGTGGTTGCATCCATCTAAAAAACAGAACACCATT
ACTTTGATTATCCACGGTACATAGATAGTATATGCTTGGAACAGAATAATACTATTAGCTTAATGGAATAATAAAGGACATGAACAGCAGGCAAACTGTG
GATGTGATACCACAGCAGTGACAACTACACATAAATAGGTAGATCACCGTGTATCATAATTCATATATATGTAGCCAACATAGCAAGTCCTGGATGTAAC
AAATAAGAAGCATATGACAAAATACAGAGCTAATCAGGTATATGTCAATGCATCCTACTAATAAAACTGCAGTACCAGCACATTAAATAACCATACCAAT
CAAATGAAGATAAA