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Detailed information on CNT30274113


BLAST search results

BLAST vs Swiss-Prot:
sp|P50378|EFTU_GONPE, E-value = 2e-14

BLAST vs NONCODE:
NONBNAT003157, E-value = 2e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Chenopodium quinoaOryza sativa73.429.0884.93458forward
CNT30672814Chenopodium quinoaSetaria viridis99.3658.1685.81620forward
CNT30520996Chenopodium quinoaSetaria italica97.9249.0485.6611forward
CNT30639730Chenopodium quinoaNymphaea colorata66.8345.3884.89417forward
CNT30535563Chenopodium quinoaEucalyptus grandis69.8753.4385.09436forward
CNT30316757Chenopodium quinoaCorylus avellana75.1639.1586.99469forward
CNT30546799Chenopodium quinoaIpomoea triloba74.5237.8787.1465forward
CNT30518094Chenopodium quinoaJuglans regia70.1946.7984.93438forward
CNT30377782Chenopodium quinoaArabidopsis thaliana99.8461.6887.16623forward
CNT30618435Chenopodium quinoaSesamum indicum48.0861.187300forward
CNT3020493Chenopodium quinoaCitrullus lanatus73.2429.688.4457forward
CNT30727585Chenopodium quinoaCorchorus capsularis74.8434.6487.37467forward
CNT30380145Chenopodium quinoaManihot esculenta70.6723.4284.13441forward
CNT30629525Chenopodium quinoaVigna unguiculata57.0582.7985.39356forward
CNT30194937Chenopodium quinoaPisum sativum75.4847.1583.65471forward
CNT30160120Chenopodium quinoaPistacia vera70.5135.487.27440forward
CNT30224987Chenopodium quinoaHordeum vulgare44.5594.2486.69278forward
CNT30387246Chenopodium quinoaTriticum turgidum70.1938.0585.62438forward
CNT30564256Chenopodium quinoaActinidia chinensis75.1640.2985.93469forward
CNT3084148Chenopodium quinoaVigna radiata63.324.2584.81395forward
CNT30541590Chenopodium quinoaBrassica napus75.3240.4186.38470forward
CNT30233904Chenopodium quinoaBrassica oleracea75.3251.2586.38470forward
CNT30173274Chenopodium quinoaTrifolium pratense7534.886.54468forward
CNT30146334Chenopodium quinoaMedicago truncatula66.6741.8586.78416forward
CNT30440472Chenopodium quinoaAegilops tauschii37.1838.9985.78232forward
CNT30247994Chenopodium quinoaAvena sativa70.0329.5386.27437forward
CNT30665783Chenopodium quinoaTriticum dicoccoides55.1337.7686.92344forward
CNT30311981Chenopodium quinoaCamelina sativa62.0298.4789.41387forward
CNT3059230Chenopodium quinoaArabidopsis lyrata75.3239.185.74470forward
CNT3077545Chenopodium quinoaBrassica juncea70.6738.1287.07441forward
CNT30614135Chenopodium quinoaArabis alpina70.6728.2786.62441forward
CNT30600411Chenopodium quinoaFraxinus excelsior61.796.0185.45385forward
CNT30449969Chenopodium quinoaSaccharum spontaneum74.6836.9386.27466forward
CNT30132437Chenopodium quinoaLolium perenne70.0336.3682.61437forward
CNT3015866Chenopodium quinoaZea mays84.7873.6886.77529forward
CNT30608730Chenopodium quinoaGossypium raimondii67.4770.1785.99421forward
CNT30651330Chenopodium quinoaRosa chinensis38.4654.4287.5240forward
CNT30203420Chenopodium quinoaHelianthus annuus43.4353.9882.66271forward
CNT30127375Chenopodium quinoaCorymbia citriodora68.9177.0683.49430forward
CNT30624959Chenopodium quinoaDaucus carota45.9984.4182.93287forward
CNT30685098Chenopodium quinoaTriticum urartu55.1323.486.92344forward
CNT30350898Chenopodium quinoaEragrostis tef68.7538.5184.85429forward
CNT30480841Chenopodium quinoaArabidopsis halleri60.160.3986.13375forward
CNT30368495Chenopodium quinoaSorghum bicolor75.1646.0385.71469forward
CNT30355420Chenopodium quinoaLactuca sativa58.3352.9187.91364forward
CNT30151899Chenopodium quinoaPrunus persica75.3242.6187.66470forward
CNT30424546Chenopodium quinoaPapaver somniferum95.0350.2186593forward
CNT30706337Chenopodium quinoaPrunus avium70.6737.8285.71441forward
CNT30644454Chenopodium quinoaCannabis sativa24.272.9591.39151forward
CNT3053027Chenopodium quinoaAmborella trichopoda60.5887.384.39378forward
CNT3024315Chenopodium quinoaPopulus trichocarpa64.7452.9584.9404forward
CNT30148140Chenopodium quinoaBrachypodium distachyon34.7857.1186.18217forward
CNT30496962Chenopodium quinoaDigitaria exilis74.8441.5585.87467forward
CNT30594462Chenopodium quinoaEragrostis curvula68.7536.8685.78429forward
CNT30603788Chenopodium quinoaOryza punctata73.438.8885.37458forward
CNT30176122Chenopodium quinoaVigna angularis69.8738.5282.34436forward
CNT30113122Chenopodium quinoaFicus carica62.0246.6387.34387forward
CNT30723969Chenopodium quinoaLupinus angustifolius91.3552.8386.32570forward
CNT3050294Chenopodium quinoaCucumis sativus62.8263.9584.69392forward

Expression of CNT30274113

Peptides detected in this lncRNA

>peptide 1 (90 aa)
PVNLGNKFGKLDSNVGGVTVKNWGVTISNLSRVVHDDDLSSEVSSFLSRVVLGVRSNVTTLEILDSNVLNIEPNVVTGKSLWKGLVVHLN*

Sequence

>CNT30274113
GCCTGTCAATCTTGGTAACAAGTTCGGAAAACTTGACAGCAATGTGGGAGGTGTGACAGTCAAGAACTGGGGCGTAACCATTTCCAATCTGTCCAGGGTG
GTTCATGATGATGACCTGAGCAGTGAAGTTAGCAGCTTCCTTAGCAGGGTCGTTCTTGGAGTCAGAAGCAACGTAACCACGCTTGAGATCCTTGACAGCA
ACGTTCTTAACATTGAACCCAACGTTGTCACCGGGAAGAGCCTCTGGAAGGGACTCGTGGTGCATCTCAACTGACTTAACTTCAGTGGTCAGTCCAGTGG
GACCGAAGGTAACAACCATACCGGGCTTCAACACACCAGTCTCAACACGTCCGACTGGCACAGTTCCAATACCTCCAATCTTGTAGACATCCTGAAGTGG
AAGACGGAGGGGCTTGTCTGAGGGCCTCTTTGGCTCGTTGATCAAGTCAAGAGCCTCAAGAAGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAA
CCCAGAGATGGGAACGAAGGGGATTTTGTCTGGGTTGTAACCAACCTTCTTGAGGTATGAGGCAACTTCCTTGACGATTTCATCGTACCTAGCCTTAGAG
TACTTGGGGGTGGTAGCATCCATC