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Detailed information on CNT3059230


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Arabidopsis lyrataOryza sativa73.0455.7587.02878forward
CNT30672814Arabidopsis lyrataSetaria viridis58.2465.6786.43700forward
CNT30520962Arabidopsis lyrataSetaria italica72.3868.2486.55870forward
CNT30639730Arabidopsis lyrataNymphaea colorata49.4264.6484.01594forward
CNT30535563Arabidopsis lyrataEucalyptus grandis65.8196.9484.7791forward
CNT30316757Arabidopsis lyrataCorylus avellana61.6561.8586.77741forward
CNT30546799Arabidopsis lyrataIpomoea triloba72.0570.5286.49866forward
CNT30518094Arabidopsis lyrataJuglans regia71.8892.3184.49864forward
CNT30371709Arabidopsis lyrataArabidopsis thaliana53.3399.5396.57641forward
CNT30618377Arabidopsis lyrataSesamum indicum21.870.2488.17262forward
CNT30274113Arabidopsis lyrataChenopodium quinoa39.175.3285.74470forward
CNT3021028Arabidopsis lyrataCitrullus lanatus67.1464.9884.26807forward
CNT30727590Arabidopsis lyrataCorchorus capsularis71.2163.1787.27856forward
CNT30380230Arabidopsis lyrataManihot esculenta73.2136.2785.34880forward
CNT30629525Arabidopsis lyrataVigna unguiculata32.1189.7785.23386forward
CNT30194937Arabidopsis lyrataPisum sativum72.887.5985.83875forward
CNT30160120Arabidopsis lyrataPistacia vera71.7169.3586.31862forward
CNT30121467Arabidopsis lyrataPhyscomitrium patens37.6968.3383453forward
CNT30287202Arabidopsis lyrataTriticum aestivum39.4365.9285.65474forward
CNT30224132Arabidopsis lyrataHordeum vulgare35.6962.5484.62429forward
CNT30387246Arabidopsis lyrataTriticum turgidum73.0476.2883.49878forward
CNT30564256Arabidopsis lyrataActinidia chinensis50.7552.4186.56610forward
CNT3084148Arabidopsis lyrataVigna radiata4734.6883.36565forward
CNT30541590Arabidopsis lyrataBrassica napus87.2790.289.421049forward
CNT30233993Arabidopsis lyrataBrassica oleracea73.4682.2291.73883forward
CNT30173274Arabidopsis lyrataTrifolium pratense68.6461.3486.06825forward
CNT30146334Arabidopsis lyrataMedicago truncatula51.6662.4785.67621forward
CNT30246955Arabidopsis lyrataAvena sativa73.0449.7585.99878forward
CNT30665783Arabidopsis lyrataTriticum dicoccoides68.890.7882.59827forward
CNT30310177Arabidopsis lyrataCamelina sativa86.9490.0995.221045forward
CNT3077051Arabidopsis lyrataBrassica juncea86.0289.690.521034forward
CNT30614135Arabidopsis lyrataArabis alpina62.3148.0192.12749forward
CNT30598511Arabidopsis lyrataFraxinus excelsior38.5271.1285.53463forward
CNT30449495Arabidopsis lyrataSaccharum spontaneum72.6371.7385.45873forward
CNT30132437Arabidopsis lyrataLolium perenne73.0473.0484.85878forward
CNT3011166Arabidopsis lyrataZea mays73.0462.0984.4878forward
CNT30608730Arabidopsis lyrataGossypium raimondii37.2774.6783.26448forward
CNT30685098Arabidopsis lyrataTriticum urartu43.9335.9286.55528forward
CNT30350898Arabidopsis lyrataEragrostis tef72.5578.2886.47872forward
CNT30480841Arabidopsis lyrataArabidopsis halleri33.0363.9397.48397forward
CNT30368495Arabidopsis lyrataSorghum bicolor60.4871.3486.24727forward
CNT30355521Arabidopsis lyrataLactuca sativa58.8274.1186.99707forward
CNT30427598Arabidopsis lyrataPapaver somniferum72.1363.3887.54867forward
CNT30706337Arabidopsis lyrataPrunus avium69.4771.6186.11835forward
CNT3024315Arabidopsis lyrataPopulus trichocarpa51.581.1383.84619forward
CNT30148140Arabidopsis lyrataBrachypodium distachyon26.4683.6887.74318forward
CNT30100761Arabidopsis lyrataOryza rufipogon29.261.2688.32351forward
CNT30580076Arabidopsis lyrataEchinochloa crusgalli32.5329.5587.21391forward
CNT30496874Arabidopsis lyrataDigitaria exilis73.0478.3286.22878forward
CNT30116111Arabidopsis lyrataOryza nivara27.7938.1787.43334forward
CNT30594443Arabidopsis lyrataEragrostis curvula73.1375.7186.69879forward
CNT30603820Arabidopsis lyrataOryza punctata72.9681.2887.12877forward
CNT30176122Arabidopsis lyrataVigna angularis70.8875.2781.69852forward
CNT30113122Arabidopsis lyrataFicus carica40.9359.2884.96492forward
CNT30724026Arabidopsis lyrataLupinus angustifolius69.357.8586.31833forward

Expression of CNT3059230

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MGVHFAPFLTAALVTLAPVGSFLSTLLMTPTATVCLMSLTAKRPSGGYSEKVSTTMGLVGVILTIPASPFFKNLGSFSISLPERLSILVKISENLTAM*

>peptide 2 (93 aa)
MMMTWEVKLAAPLAGSSFELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

Sequence

>CNT3059230
TGAGCTAAAAGAGCATGAGAGATTAAATTCAAAAGTGACACAACAGGAAAATGATAATATCCGGGGGAATGTGACAACATAACGAATCTCCAAAAAGGTT
CAAAATCGAAAACAATTCAAAAAGCAAAAAACAGACAGCTTGAGTGCCAAGTGGCCCCGCCACCTCCGATCAAGAACCCAGTTCCGGGAATTGAGCTCTG
ACGGAGAAGAAACGAAGCTGTAACACATACAAGCGACCAAATACAAAACTAAAGTGAAAACCCTAAAACAGTCGTTTGATTCATCTGCGGATAGAGTTTT
GAGGATGGGAGTTCACTTCGCACCCTTCTTGACGGCAGCCTTGGTAACCTTGGCTCCAGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCA
ACAGTCTGCCTCATGTCCCTCACGGCAAAACGTCCTAGTGGTGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTCGGAGTCATCTTAACCATAC
CGGCATCCCCATTCTTCAAAAACTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTGACTGCAATGTG
AGAGGTGTGGCAATCGAGGACTGGGGCGTAACCGTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCTGCTCCCTTGGCA
GGGTCATCCTTTGAGTTGGAGGCGACGTACCCTCTCTTAAGATCCTTCACGGCAACATTCTTAACATTGAACCCAACATTGTCACCGGGAAGTGCCTCAA
GAAGAGACTCGTGGTGCATCTCAACAGACTTGACCTCAGTGGTCAACCCTGTGGGAGCAAAGGTCACGACCATACCAGGCTTGATCATACCAGTCTCAAC
ACGTCCCACTGGCACCGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGAAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGG
TCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCTCCCTCGAATCCAGAGATGGGCACAAACGGGA
TTTTGTCGGGGTTGTAACCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATTTCATCGTACCTGGCCTTGGAGTACCTGGGGGTGGTGGCATCCAT
CT