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Detailed information on CNT30639730


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 4e-164

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Nymphaea colorataOryza sativa64.9637.985.59597forward
CNT30672814Nymphaea colorataSetaria viridis63.9855.1685.2588forward
CNT30520996Nymphaea colorataSetaria italica63.9847.1986.22588forward
CNT30535563Nymphaea colorataEucalyptus grandis6370.9687.22579forward
CNT30316757Nymphaea colorataCorylus avellana59.7445.8385.61549forward
CNT30546799Nymphaea colorataIpomoea triloba63.4447.4883.02583forward
CNT30518094Nymphaea colorataJuglans regia61.9260.7982.78569forward
CNT30371709Nymphaea colorataArabidopsis thaliana60.7286.6583.33558forward
CNT30618377Nymphaea colorataSesamum indicum41.46102.1483.46381forward
CNT30274113Nymphaea colorataChenopodium quinoa45.3866.8384.89417forward
CNT3021232Nymphaea colorataCitrullus lanatus64.5347.984.32593forward
CNT30727585Nymphaea colorataCorchorus capsularis64.243.7785.42590forward
CNT30380230Nymphaea colorataManihot esculenta58.6522.2285.16539forward
CNT30525464Nymphaea colorataPhaseolus vulgaris53.186.3781.35488forward
CNT30629525Nymphaea colorataVigna unguiculata4289.7783.68386forward
CNT30194937Nymphaea colorataPisum sativum36.7833.8385.5338forward
CNT30503993Nymphaea colorataNicotiana attenuata24.0580.3685.07221forward
CNT30712097Nymphaea colorataGlycine max37.4328.8386.05344forward
CNT30160120Nymphaea colorataPistacia vera58.6543.3685.9539forward
CNT30121467Nymphaea colorataPhyscomitrium patens41.6857.7780.94383forward
CNT30287202Nymphaea colorataTriticum aestivum28.5136.4486.64262forward
CNT30224132Nymphaea colorataHordeum vulgare36.7849.2784.32338forward
CNT30387246Nymphaea colorataTriticum turgidum63.875184.5587forward
CNT30564256Nymphaea colorataActinidia chinensis55.7143.9985.74512forward
CNT30588666Nymphaea colorataMusa acuminata30.2557.282.73278forward
CNT3084148Nymphaea colorataVigna radiata38.7421.8584.55356forward
CNT30541587Nymphaea colorataBrassica napus64.6450.5184.01594forward
CNT30233904Nymphaea colorataBrassica oleracea61.761.8384.3567forward
CNT30509820Nymphaea colorataSolanum lycopersicum23.6196.8885.25217forward
CNT30173274Nymphaea colorataTrifolium pratense59.6340.7483.39548forward
CNT30146334Nymphaea colorataMedicago truncatula68.4463.2881.88629forward
CNT30440472Nymphaea colorataAegilops tauschii35.9155.4685.45330forward
CNT30246955Nymphaea colorataAvena sativa58.6530.5485.53539forward
CNT30665783Nymphaea colorataTriticum dicoccoides58.8759.3982.44541forward
CNT30310418Nymphaea colorataCamelina sativa64.6451.2184.51594forward
CNT3059230Nymphaea colorataArabidopsis lyrata64.6449.4284.01594forward
CNT3077042Nymphaea colorataBrassica juncea64.6449.3484.01594forward
CNT30614135Nymphaea colorataArabis alpina58.8734.6884.29541forward
CNT30600411Nymphaea colorataFraxinus excelsior23.0752.8787.26212forward
CNT30449969Nymphaea colorataSaccharum spontaneum64.5346.9984.15593forward
CNT30132437Nymphaea colorataLolium perenne63.8748.8481.09587forward
CNT3011166Nymphaea colorataZea mays58.7638.1985.93540forward
CNT30608730Nymphaea colorataGossypium raimondii48.4274.1783.6445forward
CNT30228831Nymphaea colorataAnanas comosus23.0767.5285.85212forward
CNT30651330Nymphaea colorataRosa chinensis26.2254.6588.38241forward
CNT30203420Nymphaea colorataHelianthus annuus26.9949.485.08248forward
CNT30127375Nymphaea colorataCorymbia citriodora56.9193.7386.23523forward
CNT30624959Nymphaea colorataDaucus carota33.6290.8883.17309forward
CNT30684845Nymphaea colorataTriticum urartu33.8418.9986.17311forward
CNT30350898Nymphaea colorataEragrostis tef59.0948.7485.08543forward
CNT30480841Nymphaea colorataArabidopsis halleri37.5455.5681.45345forward
CNT30368495Nymphaea colorataSorghum bicolor64.5358.1983.31593forward
CNT30355521Nymphaea colorataLactuca sativa56.854.7280.65522forward
CNT30151899Nymphaea colorataPrunus persica33.1927.6584.26305forward
CNT30424546Nymphaea colorataPapaver somniferum58.4345.4783.8537forward
CNT30706337Nymphaea colorataPrunus avium6349.6684.11579forward
CNT3052982Nymphaea colorataAmborella trichopoda32.122.5586.44295forward
CNT3024428Nymphaea colorataPopulus trichocarpa61.5974.1883.39566forward
CNT3037774Nymphaea colorataCucumis melo34.7141.2784.64319forward
CNT30148140Nymphaea colorataBrachypodium distachyon35.2685.2689.2324forward
CNT30101006Nymphaea colorataOryza rufipogon34.8245.9885320forward
CNT30579541Nymphaea colorataEchinochloa crusgalli25.941.3286.13238forward
CNT30496874Nymphaea colorataDigitaria exilis64.6452.9985.02594forward
CNT30594462Nymphaea colorataEragrostis curvula59.0946.6585.08543forward
CNT30603788Nymphaea colorataOryza punctata64.9650.6885.26597forward
CNT30176122Nymphaea colorataVigna angularis64.5352.3981.28593forward
CNT30113122Nymphaea colorataFicus carica42.1146.6384.75387forward
CNT30724026Nymphaea colorataLupinus angustifolius64.240.9783.39590forward
CNT3050518Nymphaea colorataCucumis sativus35.852.9887.23329forward

Expression of CNT30639730

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVSWARWWIARSYCHPQSQKWGQMGSCQGCTQPSLGKRTPP*

>peptide 2 (49 aa)
EQERQTPPPIKHPILLRPKRNNNLINTELPKTSPPTHSPDTIKRQKTAG*

>peptide 3 (50 aa)
MVDIRRRSPQPWAWSESSSQTPHLRSSRTWAPSRALCRNACRSWSGSRQT*

>peptide 4 (62 aa)
MSRTAKRPNGGYSEKVSTTMGLVGIIFTNPASPFFKNLGSFSSSLPERLSILVRISANLTAM*

>peptide 5 (89 aa)
MVHLNGLDFSSKTSRAKSDNHAWLENSSLNTADRDCTDSTNLVHVLEGKTEGLVRWSLGLVGGSLDHIVTLKARNGDKWDLVRVVPNLL*

>peptide 6 (70 aa)
MPGLRTPVSTRPTGTVPIPPILYTSWRGRRRGLSDGLLGSLVDRSIILSPSKPEMGTNGILSGLYPTFFR*

Sequence

>CNT30639730
GAACAGGAAAGACAAACGCCACCGCCTATCAAGCACCCAATTCTGCTGCGTCCGAAAAGGAACAATAACTTAATCAACACAGAGCTGCCGAAAACATCAC
CGCCTACACACTCACCCGACACTATCAAACGACAAAAAACAGCAGGATAACAAGAACAGCCATCTTCTACCCTCTGAGATACTCATTTCTTCTTGGCAGC
TGACTTGCCACAGTCTGCCTCATGTCACGCACGGCAAAACGCCCCAATGGTGGATATTCGGAGAAGGTCTCCACAACCATGGGCTTGGTCGGAATCATCT
TCACAAACCCCGCATCTCCGTTCTTCAAGAACTTGGGCTCCTTCTCGAGCTCTTTGCCGGAACGCCTGTCGATCTTGGTCAGGATCTCGGCAAACTTGAC
AGCAATGTGAGAGGTGTGACAATCGAGCACGGGGGCGTAACCGTTTCCAATCTGCCCAGGGTGGTTCATGATAATGACTTGAGAAGTGAAGTTGGCAGCT
TCCTTGGCAGGATCGTCCTTTGAGTTGGAAGCAACAAACCCACGCTTGAGATCCTTGACAGCAACATTCTTCACGTTGAACCCGACGTTGTCACCGGGGA
GAGCCTCCTGAAGAGCCTCATGGTGCATCTCAACGGACTTGACTTCAGTAGTAAGACCAGTAGGGCCAAAAGTGACAACCATGCCTGGCTTGAGAACTCC
AGTCTCAACACGGCCGACAGGGACTGTACCGATTCCACCAATCTTGTACACGTCCTGGAGGGGAAGACGGAGGGGCTTGTCCGATGGTCTCTTGGGCTCG
TTGGTGGATCGCTCGATCATATTGTCACCCTCAAAGCCAGAAATGGGGACAAATGGGATCTTGTCAGGGTTGTACCCAACCTTCTTTAGGTAAGAGGACA
CCTCCTTAACAATTTCATC