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Detailed information on CNT30521010


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316757Setaria italicaCorylus avellana67.6161.5287.52737forward
CNT30546799Setaria italicaIpomoea triloba79.3670.4487.98865forward
CNT3021232Setaria italicaCitrullus lanatus80.4670.8483.58877forward
CNT30727590Setaria italicaCorchorus capsularis79.8264.2187.93870forward
CNT30380230Setaria italicaManihot esculenta80.6436.2385.67879forward
CNT30194937Setaria italicaPisum sativum80.9288.2985.15882forward
CNT30160120Setaria italicaPistacia vera81.6571.687.53890forward
CNT30387246Setaria italicaTriticum turgidum81.176.888.57884forward
CNT3084148Setaria italicaVigna radiata53.2135.685.69580forward
CNT30238010Setaria italicaBrassica oleracea80.5571.7385.88878forward
CNT30173274Setaria italicaTrifolium pratense77.3462.6886.48843forward
CNT30246955Setaria italicaAvena sativa81.150.0890.38884forward
CNT3077042Setaria italicaBrassica juncea80.5572.9286.79878forward
CNT30614135Setaria italicaArabis alpina68.7248.0186.38749forward
CNT30598511Setaria italicaFraxinus excelsior44.1373.8986.49481forward
CNT30685098Setaria italicaTriticum urartu48.4435.9290.72528forward
CNT30355521Setaria italicaLactuca sativa62.3971.2885.59680forward
CNT30427598Setaria italicaPapaver somniferum79.7263.5285.16869forward
CNT30706337Setaria italicaPrunus avium76.6171.6186.71835forward
CNT30594443Setaria italicaEragrostis curvula81.1976.2391.3885forward
CNT30176122Setaria italicaVigna angularis78.0775.1883.55851forward
CNT30724026Setaria italicaLupinus angustifolius77.7158.8286.66847forward

Expression of CNT30521010

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30521010
TAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAAT
GGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCT
TAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGG
AGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGC
TCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGA
TCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACAAACCCACGCTTGAG
ATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTA
GTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACA
CATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAG
GTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAG
ACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGGTGGCATCCATCTACAAACAGAATAGAAACATAAGATCATCA