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Detailed information on CNT30706337


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Prunus aviumOryza sativa71.6153.0285.39835forward
CNT30677701Prunus aviumSetaria viridis58.4999.5686.66682forward
CNT30521010Prunus aviumSetaria italica71.6176.6186.71835forward
CNT30639730Prunus aviumNymphaea colorata49.666384.11579forward
CNT30535563Prunus aviumEucalyptus grandis68.4497.7984.59798forward
CNT30316757Prunus aviumCorylus avellana64.7563.0288.34755forward
CNT30546799Prunus aviumIpomoea triloba70.2466.6986.32819forward
CNT30518094Prunus aviumJuglans regia71.7889.4285.78837forward
CNT30377782Prunus aviumArabidopsis thaliana56.665.3586.82660forward
CNT30274113Prunus aviumChenopodium quinoa37.8270.6785.71441forward
CNT3021232Prunus aviumCitrullus lanatus71.6167.4583.23835forward
CNT30727590Prunus aviumCorchorus capsularis70.6760.8186.41824forward
CNT30380230Prunus aviumManihot esculenta71.6134.4286.59835forward
CNT30525464Prunus aviumPhaseolus vulgaris34.1370.4485.93398forward
CNT30629544Prunus aviumVigna unguiculata33.9652.3886.62396forward
CNT30194937Prunus aviumPisum sativum70.2481.9884.98819forward
CNT30712097Prunus aviumGlycine max37.3936.5585.32436forward
CNT30160120Prunus aviumPistacia vera71.6167.1888.02835forward
CNT30287202Prunus aviumTriticum aestivum40.1465.0987.39468forward
CNT30224132Prunus aviumHordeum vulgare33.535783.63391forward
CNT30387246Prunus aviumTriticum turgidum71.8772.8183.89838forward
CNT30564256Prunus aviumActinidia chinensis52.6652.7585.02614forward
CNT3084148Prunus aviumVigna radiata5035.7985.59583forward
CNT30541587Prunus aviumBrassica napus71.617186.71835forward
CNT30233993Prunus aviumBrassica oleracea71.6177.7586.59835forward
CNT30173274Prunus aviumTrifolium pratense68.2759.1886.06796forward
CNT30146334Prunus aviumMedicago truncatula52.2361.2785.22609forward
CNT30246955Prunus aviumAvena sativa72.0447.5985.36840forward
CNT30665783Prunus aviumTriticum dicoccoides68.5287.7182.85799forward
CNT30310177Prunus aviumCamelina sativa71.6171.9886.47835forward
CNT3059230Prunus aviumArabidopsis lyrata71.6169.4786.11835forward
CNT3077051Prunus aviumBrassica juncea71.4472.1886.55833forward
CNT30614135Prunus aviumArabis alpina63.6447.5686.39742forward
CNT30598511Prunus aviumFraxinus excelsior40.3972.3585.99471forward
CNT30449495Prunus aviumSaccharum spontaneum71.4468.4585.59833forward
CNT30132437Prunus aviumLolium perenne72.0469.8883.81840forward
CNT3011166Prunus aviumZea mays71.6159.0586.35835forward
CNT30608730Prunus aviumGossypium raimondii33.1964.587.08387forward
CNT30647369Prunus aviumRosa chinensis25.1332.3492.15293forward
CNT30127375Prunus aviumCorymbia citriodora46.3196.7784.63540forward
CNT30685098Prunus aviumTriticum urartu44.8535.5888.15523forward
CNT30350898Prunus aviumEragrostis tef71.7875.1385.07837forward
CNT30480841Prunus aviumArabidopsis halleri34.0563.9385.39397forward
CNT30368770Prunus aviumSorghum bicolor61.4110085.61716forward
CNT30355521Prunus aviumLactuca sativa60.6374.1186707forward
CNT30151899Prunus aviumPrunus persica29.0730.7397.05339forward
CNT30427756Prunus aviumPapaver somniferum70.4162.9685.63821forward
CNT3024428Prunus aviumPopulus trichocarpa53.7782.1886.44627forward
CNT3037774Prunus aviumCucumis melo40.5761.1987.74473forward
CNT30148140Prunus aviumBrachypodium distachyon31.3996.3286.89366forward
CNT30496962Prunus aviumDigitaria exilis71.6174.2985.63835forward
CNT30116111Prunus aviumOryza nivara27.4436.5789.38320forward
CNT30594443Prunus aviumEragrostis curvula72.1372.4485.97841forward
CNT30603820Prunus aviumOryza punctata71.6177.3985.75835forward
CNT30176122Prunus aviumVigna angularis70.8472.9781.96826forward
CNT30113122Prunus aviumFicus carica39.1154.9486.18456forward
CNT30724026Prunus aviumLupinus angustifolius69.356.1187808forward
CNT3050294Prunus aviumCucumis sativus45.3786.384.5529forward

Expression of CNT30706337

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MEGTQRKSPQPLAWWEASSPYLHLRSSKIWAPSQSPYRTSCQSW*

>peptide 2 (41 aa)
MEHRELAEAKELQTNLAKQFKNTQLKYESLKAMHKFASLKF*

>peptide 3 (51 aa)
MMMTWDVKLAASLAGSSLELDATKPRLRSFTATFLTLNPTLSPGSASRRAS*

>peptide 4 (48 aa)
MMHLNRLNFSGEPSWSKSDNHTRLDNTGLHTTHWHSSNTTNLVHILKW*

>peptide 5 (62 aa)
MSRTAKRPNGGYSEKVSTTIGLVGSIFTIPASPFFKNLGSFSISLPDLLSILVRISPNFTAM*

Sequence

>CNT30706337
GAATTAAAAATACTCCAAAGCCAAATATATAAGGTTGAAAAAATTATCCATTCAACAGACGCAACAAAACTTGAAAATTAAATAGTCTCAACTCTCAACA
TCCTCCTTAAAACGGCGGAATTGACTCAAACATAAACCAGCAATGTCACCACCGCCTGTCCAGCACCCAATTCTGAGCGCATACACCGGAGATGGAGCAT
AGAGAACTAGCAGAAGCAAAAGAACTACAGACTAATCTGGCTAAACAATTTAAAAACACACAACTTAAATATGAGTCTTTAAAAGCGATGCATAAGTTTG
CGTCATTGAAATTTTGATACTGTGACTGGGATCCTTCTTCTCCACGCTCTTGATAACACCAACAGCAACGGTCTGACGCATGTCACGAACAGCAAAACGA
CCCAATGGAGGGTACTCAGAGAAAGTCTCCACAACCATTGGCTTGGTGGGAAGCATCTTCACCATACCTGCATCTCCGTTCTTCAAAAATTTGGGCTCCT
TCTCAATCTCCTTACCGGACCTCCTGTCAATCTTGGTGAGGATCTCACCGAACTTCACAGCAATGTGAGAAGTGTGGCAATCAAGAACTGGAGCATATCC
GTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGATGTGAAGTTGGCAGCCTCCCTGGCGGGATCATCCTTGGAGTTAGATGCAACAAAACCA
CGCTTGAGATCCTTCACAGCAACATTCTTAACATTGAATCCGACATTGTCACCAGGCAGTGCCTCCAGAAGGGCCTCATGATGCATCTCAACAGACTTAA
CTTCAGTGGTGAGCCCAGTTGGTCCAAAAGTGATAACCATACCAGGCTTGATAACACCGGTCTCCACACGACCCACTGGCACAGTTCCAATACCACCAAT
CTTGTACACATCCTGAAGTGGTAGTCGGAGGGGCTTGTCGGAGGGCCTCTTGGGCTCATTGATCAAGTCAAGAGCCTCAAGAAGGGTTGGTCCCTTGTAC
CAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAACCCAGAGATGGGAACAAAGGCAATTTTGTCCGGGTTGTACCCAACCTTCTTCAGAT
AGGATGAGACTTCCTTCACGATTTCATCATACCTTGCCTTGGAGTACTTGGGAGTAGTGGCATCCA