« Back to Citrullus lanatus search


Detailed information on CNT3021232


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 0.0

BLAST vs NONCODE:
NONMEST004097, E-value = 5e-169

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521010Citrullus lanatusSetaria italica70.8480.4683.58877forward
CNT30639730Citrullus lanatusNymphaea colorata47.964.5384.32593forward
CNT30535563Citrullus lanatusEucalyptus grandis64.397.5584.17796forward
CNT30316757Citrullus lanatusCorylus avellana58.3260.2784.9722forward
CNT30377782Citrullus lanatusArabidopsis thaliana55.968.5182.95692forward
CNT30727590Citrullus lanatusCorchorus capsularis69.7163.6984.94863forward
CNT30380230Citrullus lanatusManihot esculenta70.8436.1583.58877forward
CNT30160120Citrullus lanatusPistacia vera68.0167.7485.99842forward
CNT30387246Citrullus lanatusTriticum turgidum70.8476.1981.07877forward
CNT30541587Citrullus lanatusBrassica napus70.1173.8183.29868forward
CNT30238010Citrullus lanatusBrassica oleracea70.1170.9283.41868forward
CNT30509820Citrullus lanatusSolanum lycopersicum18.0199.5587.44223forward
CNT30173274Citrullus lanatusTrifolium pratense64.6259.4884.25800forward
CNT30146334Citrullus lanatusMedicago truncatula50.0862.3785.16620forward
CNT30246955Citrullus lanatusAvena sativa67.9347.6582.28841forward
CNT30310418Citrullus lanatusCamelina sativa67.8572.4184.52840forward
CNT30614135Citrullus lanatusArabis alpina59.4547.1884.1736forward
CNT30608730Citrullus lanatusGossypium raimondii34.5771.3384.35428forward
CNT30127375Citrullus lanatusCorymbia citriodora42.2593.7384.51523forward
CNT30350898Citrullus lanatusEragrostis tef67.4574.9684.31835forward
CNT30480841Citrullus lanatusArabidopsis halleri31.1862.1685.23386forward
CNT30355521Citrullus lanatusLactuca sativa56.2272.9684.34696forward
CNT30706337Citrullus lanatusPrunus avium67.4571.6183.23835forward
CNT3024315Citrullus lanatusPopulus trichocarpa51.1382.9683.89633forward
CNT30580076Citrullus lanatusEchinochloa crusgalli32.6330.5486.39404forward
CNT30496874Citrullus lanatusDigitaria exilis70.8478.2384.04877forward
CNT30594443Citrullus lanatusEragrostis curvula68.0172.5284.2842forward
CNT30603820Citrullus lanatusOryza punctata70.7681.1983.79876forward

Expression of CNT3021232

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KVIDTKGLNNVLKQKRSIMKETETKVNTIIKSSLK*

>peptide 2 (54 aa)
MVHLNRLYFSSQSSWGKGDNHTGLDNTSFHTTHWNSSNTTNLVDILKWKTKGFV*

>peptide 3 (62 aa)
MSLTANRPSGGYSENVSTTMGLVGIILTNPASPFFKNLGSFSSSLPDRLSILVKISANLTAM*

Sequence

>CNT3021232
AAAGTAATAGACACAAAGGGGCTTAATAATGTACTCAAACAAAAACGATCCATCATGAAAGAAACAGAAACGAAAGTCAATACCATAATAAAAAGTAGCT
TAAAATAAAACACGCATAAAACATACAATAATCTTCAAAGTTTTTAAAAGGAAGACTTGCCACCGCCGATCAAGCACCCAATTCTGAGAGAAGCTGCTCA
GCGACGATGGAGGAAACTTGAAGACGTGACCAATGAGACAGACACAAAACAAACCCCAAGCAGATATTAATTCAACAACAACCCAGTCATCATTGTGACT
AACATCAAGCCGTTCGGCTTTACTACCGCCAACGGCTACTCGTACCATTCACTTCCCTGATTTCTTAGCTGCAGACTTGGTGACTTTAGCGCCGGATGGG
TCCTTCTTCTCGACGGCCTTGATGACACCAACAGCCACAGTTTGACGCATGTCCCTCACGGCAAATCGTCCAAGTGGAGGATACTCGGAGAATGTTTCCA
CCACCATGGGCTTGGTGGGGATCATCTTAACAAATCCAGCATCTCCGTTTTTCAAGAACTTGGGCTCTTTCTCGAGTTCTTTACCAGATCGCCTGTCAAT
CTTGGTTAAAATCTCGGCAAATTTGACTGCAATGTGAGAGGTGTGGCAGTCGAGGACAGGAGCATAGCCATTTCCAATCTGCCCTGGATGGTTCATGATA
ATAACTTGGGAAGTGAAATTGGCAGCTTCCTTAGCAGGGTCATCCTTGGAATTTGAGGCAACGTAACCACGCTTGAGATCCTTCACAGCAACATTCTTCA
CGTTGAACCCCACATTATCACCAGGGAGAGCTTCTTGGAGAGCTTCATGGTGCATCTCAACAGACTTTACTTCAGTAGTCAGTCCAGTTGGGGCAAAGGT
GACAACCATACCGGGCTTGATAATACCAGTTTCCACACGACCCACTGGAACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGAAGACGAAGG
GGTTTGTCTGATGGTCTCTTAGGCTCTTGGATCAGGTCAAGGGCCTCAAGAAGAGTTGGTCCCTTGTACCAGTCGAGGTTTGTAGATCTTTCAATCATGT
TGTCACCCTCAAATCCAGAGATCGGGACGAAGGGAATTTTGTCTGGGTTATACCCAACCTTCTTGAGGTAAGAAGAAACTTCCTTCACGATTTCATCGTA
CCTAGATTTTGAGTACTTGGGAGTGGTAGCATCCATCT