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Detailed information on CNT30608730


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 2e-99

BLAST vs NONCODE:
NONMEST004097, E-value = 4e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Gossypium raimondiiOryza sativa74.6728.4484.6448forward
CNT30678319Gossypium raimondiiSetaria viridis7573.2985.56450forward
CNT30520996Gossypium raimondiiSetaria italica7536.1286450forward
CNT30639730Gossypium raimondiiNymphaea colorata74.1748.4283.6445forward
CNT30535563Gossypium raimondiiEucalyptus grandis74.1754.5385.17445forward
CNT30316757Gossypium raimondiiCorylus avellana74.8337.4887.31449forward
CNT30546799Gossypium raimondiiIpomoea triloba74.3336.3285.2446forward
CNT30518094Gossypium raimondiiJuglans regia74.6747.8685.94448forward
CNT30377782Gossypium raimondiiArabidopsis thaliana74.6744.3683.71448forward
CNT30618435Gossypium raimondiiSesamum indicum41.1750.3190.69247forward
CNT30274113Gossypium raimondiiChenopodium quinoa70.1767.4785.99421forward
CNT3021232Gossypium raimondiiCitrullus lanatus71.3334.5784.35428forward
CNT30727585Gossypium raimondiiCorchorus capsularis74.6733.2389.96448forward
CNT30525464Gossypium raimondiiPhaseolus vulgaris49.552.5787.88297forward
CNT30629525Gossypium raimondiiVigna unguiculata59.3382.7986.24356forward
CNT30505987Gossypium raimondiiNicotiana attenuata24.8345.2989.93149forward
CNT30160120Gossypium raimondiiPistacia vera74.6736.0487.72448forward
CNT30224987Gossypium raimondiiHordeum vulgare42.3386.185.83254forward
CNT30387246Gossypium raimondiiTriticum turgidum62.8332.7583.29377forward
CNT30564256Gossypium raimondiiActinidia chinensis74.1738.2387.19445forward
CNT30588666Gossypium raimondiiMusa acuminata43.553.783.14261forward
CNT30541587Gossypium raimondiiBrassica napus74.6738.184.15448forward
CNT30233993Gossypium raimondiiBrassica oleracea74.6741.7183.04448forward
CNT30509820Gossypium raimondiiSolanum lycopersicum37.3310087.5224forward
CNT30173274Gossypium raimondiiTrifolium pratense74.6733.3184.38448forward
CNT30146334Gossypium raimondiiMedicago truncatula73.8344.5786443forward
CNT30440472Gossypium raimondiiAegilops tauschii41.541.8586.75249forward
CNT30246955Gossypium raimondiiAvena sativa7525.586.22450forward
CNT30665783Gossypium raimondiiTriticum dicoccoides5032.9386.33300forward
CNT30310418Gossypium raimondiiCamelina sativa74.6738.6283.26448forward
CNT3059230Gossypium raimondiiArabidopsis lyrata74.6737.2783.26448forward
CNT3077042Gossypium raimondiiBrassica juncea74.6737.2183.93448forward
CNT30598511Gossypium raimondiiFraxinus excelsior38.1735.1890.39229forward
CNT30449969Gossypium raimondiiSaccharum spontaneum7535.6685.11450forward
CNT3011166Gossypium raimondiiZea mays7531.8286.22450forward
CNT30228831Gossypium raimondiiAnanas comosus31.8360.8386.39191forward
CNT30651330Gossypium raimondiiRosa chinensis39.553.7489.03237forward
CNT30203420Gossypium raimondiiHelianthus annuus42.1750.483.4253forward
CNT30127375Gossypium raimondiiCorymbia citriodora74.3379.9385.2446forward
CNT30624959Gossypium raimondiiDaucus carota44.6778.8285.45268forward
CNT30684845Gossypium raimondiiTriticum urartu51.8318.9987.14311forward
CNT30350898Gossypium raimondiiEragrostis tef74.6740.2285.27448forward
CNT30480841Gossypium raimondiiArabidopsis halleri54.3352.584.36326forward
CNT30368770Gossypium raimondiiSorghum bicolor7562.8585.11450forward
CNT30355521Gossypium raimondiiLactuca sativa74.546.8683.89447forward
CNT30151899Gossypium raimondiiPrunus persica48.3326.2985.86290forward
CNT30427756Gossypium raimondiiPapaver somniferum74.8334.4385.52449forward
CNT30706337Gossypium raimondiiPrunus avium64.533.1987.08387forward
CNT3031228Gossypium raimondiiTheobroma cacao21.3351.6192.97128forward
CNT3052982Gossypium raimondiiAmborella trichopoda45.8321.0287.64275forward
CNT3024315Gossypium raimondiiPopulus trichocarpa73.8358.0685.33443forward
CNT3037774Gossypium raimondiiCucumis melo50.6739.3386.84304forward
CNT30148140Gossypium raimondiiBrachypodium distachyon40.6764.2188.11244forward
CNT30100761Gossypium raimondiiOryza rufipogon40.8342.7684.9245forward
CNT30496874Gossypium raimondiiDigitaria exilis74.1739.787.19445forward
CNT30594462Gossypium raimondiiEragrostis curvula74.6738.4986.38448forward
CNT30603788Gossypium raimondiiOryza punctata74.6738.0385.04448forward
CNT30176122Gossypium raimondiiVigna angularis5026.587.33300forward
CNT30113122Gossypium raimondiiFicus carica60.8343.9885.75365forward
CNT30724026Gossypium raimondiiLupinus angustifolius74.531.0484.79447forward
CNT3050294Gossypium raimondiiCucumis sativus54.8353.6784.8329forward

Expression of CNT30608730

Peptides detected in this lncRNA

>peptide 1 (44 aa)
APSQAPFQIACRSWLAIRKISQQCGRYGSQGLGHIRFQSAQGGS*

>peptide 2 (47 aa)
SFSSSFPDRLSILVSNSENFTAMWEVWQSRTGAYPFPICPGWFMMMT*

>peptide 3 (54 aa)
MVHLNRLNFSGQTRGAKGHYHTRLKDTSLNTTNRDSSNATNLVDILKWEPEWLV*

>peptide 4 (37 aa)
MAVKDWGISVSNLPRVVHDDDLRGEAGSLLCRIILRV*

Sequence

>CNT30608730
GCTCCTTCTCAAGCTCCTTTCCAGATCGCCTGTCGATCTTGGTTAGCAATTCGGAAAATTTCACAGCAATGTGGGAGGTATGGCAGTCAAGGACTGGGGC
ATATCCGTTTCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGAGAGGTGAAGCTGGCAGCCTCCTTTGCAGGATCATCCTTAGAGTTTGAAGCAACG
AAACCACGCTTGAGATCCTTAACAGCAACGTTCTTGACATTGAATCCAACATTGTCACCAGGGAGAGCCTCAGAGAGGGCTTCATGGTGCATCTCAACAG
ACTTAACTTCAGTGGTCAGACCAGAGGGGCCAAAGGTCACTACCATACCAGGCTTAAGGACACCAGTCTCAACACGACCAACAGGGACAGTTCCAATGCC
ACCAATCTTGTAGACATCCTGAAGTGGGAGCCGGAGTGGCTTGTCTGAAGTGGGAGCCGGAGTGGCTTGTCTGAAGGCCTCTTGGGCTCATTGATCTGGT
CAAGAGCCTCAAGGAGAGTGGGACCCTTGTACCAGTCAAGGTTGGTAGACCTCTCAATCATGTTATCACCCTCAAATCCAGAGATTGGGACAAATGGGAT