Detailed information on CNT30368770


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-170

BLAST vs NONCODE:
NONBNAT001751, E-value = 1e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677701Sorghum bicolorSetaria viridis90.7894.8992.77650forward
CNT30535563Sorghum bicolorEucalyptus grandis10087.7585.34716forward
CNT30316757Sorghum bicolorCorylus avellana92.4655.2687.46662forward
CNT30546799Sorghum bicolorIpomoea triloba10058.3187.15716forward
CNT30518094Sorghum bicolorJuglans regia95.3972.9786.38683forward
CNT3021235Sorghum bicolorCitrullus lanatus90.7892.7284.15650forward
CNT30380145Sorghum bicolorManihot esculenta99.5837.8785.69713forward
CNT30525464Sorghum bicolorPhaseolus vulgaris81.42103.1981.82583forward
CNT30160120Sorghum bicolorPistacia vera95.3954.9587.85683forward
CNT30387246Sorghum bicolorTriticum turgidum96.6560.1287.28692forward
CNT30564256Sorghum bicolorActinidia chinensis85.7552.7587.62614forward
CNT3084148Sorghum bicolorVigna radiata79.0534.7584.98566forward
CNT30310177Sorghum bicolorCamelina sativa98.8861.0386.02708forward
CNT30614135Sorghum bicolorArabis alpina97.6344.8186.55699forward
CNT30608730Sorghum bicolorGossypium raimondii62.857585.11450forward
CNT30685098Sorghum bicolorTriticum urartu72.6335.3789.23520forward
CNT30355521Sorghum bicolorLactuca sativa92.669.585.67663forward
CNT30706337Sorghum bicolorPrunus avium10061.4185.61716forward
CNT30594443Sorghum bicolorEragrostis curvula100.1461.7690.38717forward
CNT30113122Sorghum bicolorFicus carica68.8559.485.4493forward
CNT3050294Sorghum bicolorCucumis sativus73.1885.4883.97524forward

Expression of CNT30368770

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTCEVKLAASLAGSSLELEATYPRFRSFTATFLTLKPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (50 aa)
VGTIFTIPASPFLRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 3 (40 aa)
GNHLHHTSITVLEEFGLLLKLLARSPINLGNQLSKLDSNV*

Sequence

>CNT30368770
GTGGGAACCATCTTCACCATACCAGCATCACCGTTCTTGAGGAATTTGGGCTCCTTCTCAAGCTCCTTGCCAGATCGCCTATCAATCTTGGTAACCAGCT
CAGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCATTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGTGAGGT
GAAGCTAGCCGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACATACCCACGCTTCAGATCCTTCACAGCAACATTCTTAACATTGAAGCCAACA
TTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTAACCTCAGTTGTAAGGCCACTAGGACCGAAGGTGACAACCATACCAG
GCTTGATGATACCAGTCTCAACACGTCCCACAGGAACAGTTCCAATACCACCAATTTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAAGG
TCTCTTTGGCTCATTGATTAAGTCCAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCAAAA
CCAGAGATGGGAACAAAGTGGATCTTGTCTGGGTTGTATCCAACCTTCTTCAGGTAAGAAGAGACTTCCTTAACAATCTCATCATAACGGGCCTTCGAGT
ACTTGGGTGTCGTGGC