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Detailed information on CNT30247994


BLAST search results

BLAST vs Swiss-Prot:
sp|P34824|EF1A1_HORVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274113Avena sativaChenopodium quinoa29.5370.0386.27437forward
CNT30712097Avena sativaGlycine max39.5349.0482.56585forward
CNT3093993Avena sativaSolanum tuberosum22.8464.7587.87338forward
CNT30288144Avena sativaTriticum aestivum24.1996.7694.13358forward
CNT30387246Avena sativaTriticum turgidum59.0575.9389.36874forward
CNT30541587Avena sativaBrassica napus54.9369.1385.24813forward
CNT30608684Avena sativaGossypium raimondii22.8480.2988.46338forward
CNT3067093Avena sativaLeersia perrieri18.1860.1894.42269forward
CNT30646927Avena sativaRosa chinensis20.8191.6788.64308forward
CNT30689637Avena sativaTriticum urartu24.5937.394.78364forward
CNT30120727Avena sativaCitrus clementina23.7263.8290.31351forward
CNT30101083Avena sativaOryza rufipogon24.1967.0492.18358forward
CNT30116334Avena sativaOryza nivara23.8557.8792.07353forward

Expression of CNT30247994

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSRTAKRPRGGYWEKVSTTMGLVGIIFTKPASPFLRNLGKASISLPERLSTLVWISENLTAMWDVWQSSTGA*

>peptide 2 (87 aa)
MISTAQSAWEVPVIMFLMKSRCPGASMTVQEYLVVSNFQRAISMVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSMPPSL*

>peptide 3 (93 aa)
MMMTWATKLAASLAGSSLALEATYPRLISFTATFFTLKPTLSPGRASSMDSWCISTDFTSVVSPVGPKVTSIPGLITPVSTRPTGTVPMPPIL*

Sequence

>CNT30247994
GGCATACCAGCAACAAATAATATGACTCGAAATTTCTGACGTATATATAGAGAGTAGCAACAATAATGGAACACAGCAGGACATTGTTTCACCAACATAA
CCGAAAGATAGAATGATAAGCAGCACGAAGGCTGGACGACGCACATAACCGAACTCCAGAGAACGGGCAAGTTCCCAGATTCACTAACACGACTACCATC
GCCATATACCACCACTACGGTTGTAGTAGTGGACAACCACCGGGCACCATCTCATTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCGCCAGTGGGGTCC
TTCTCCACGCTCTTGATCACACCGACGGCAACGGTCTGCCTCATGTCACGCACGGCAAAGCGGCCAAGGGGAGGGTACTGGGAGAAGGTCTCCACCACCA
TGGGCTTGGTGGGAATCATCTTCACGAAGCCAGCGTCGCCGTTCTTGAGGAACTTGGGGAAGGCCTCAATCTCCTTACCGGAACGCCTGTCGACCTTGGT
CTGGATCTCAGAGAACTTGACAGCGATGTGGGACGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGGCCAGGGTGGTTCATGATGATGACC
TGGGCAACGAAGTTGGCAGCCTCCTTGGCAGGGTCGTCCTTGGCGTTGGAGGCGACGTATCCACGCTTGATATCCTTCACAGCCACGTTCTTCACGTTGA
AGCCAACGTTGTCACCTGGCAGAGCCTCCAGCATGGACTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTCAGCCCAGTTGGGCCAAAGGTGACAAG
CATACCAGGCTTGATCACTCCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTG
TCTGAGGGTCTCTTGGGCTCGTTGATCTGGTCAAGCGCCTCAAGAAGGGTGGGGCCCTTGTACCAGTCAAGGTTGCTGGACCTCTCAATCATGTTGTCAC
CCTCAAATCCAGAGATGGGGACAAATGGGACCTTGTCAGGGTTGTAGCCCACCTTCTTCAAGTAGGAGCCAACTTCCTTGACAATTTCCTCAAAACGGCC
CTTGGAGTACTTGGGGTCAATGATAAGCACAGCACAATCAGCCTGGGAGGTACCGGTGATCATGTTCTTGATGAAGTCACGGTGTCCAGGAGCATCGATG
ACAGTGCAGGAGTACTTGGTAGTCTCGAACTTCCAGAGGGCAATATCAATGGTGATACCCCTCTCACGCTCAGCCTTGAGCTTGTCCAGCACCCACGCGT
ACTTGAAGGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCGATGCCTCCAAGCTTGTAGATGAGGTGGCCAGTGGT
TGTCGACTTTCCAGAGTCGACATGGCCAATGACCACAATGCTGATGTGAATCTTCTCCTTACCCATGGCTGATGGAGCTC