« Back to Brassica napus search


Detailed information on CNT30541587


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Brassica napusSetaria viridis59.5265.6786700forward
CNT30521093Brassica napusSetaria italica72.9676.8186.48858forward
CNT30639730Brassica napusNymphaea colorata50.5164.6484.01594forward
CNT30535563Brassica napusEucalyptus grandis67.3597.0684.97792forward
CNT30377782Brassica napusArabidopsis thaliana60.270.191.81708forward
CNT30618435Brassica napusSesamum indicum29.5970.8885.06348forward
CNT3021232Brassica napusCitrullus lanatus73.8170.1183.29868forward
CNT30727590Brassica napusCorchorus capsularis72.9663.3286.6858forward
CNT30380230Brassica napusManihot esculenta74.8336.2783.75880forward
CNT30194937Brassica napusPisum sativum74.487.5985.6875forward
CNT30160120Brassica napusPistacia vera73.369.3586.54862forward
CNT30637620Brassica napusCapsicum annuum21.6813.2888.24255forward
CNT30387246Brassica napusTriticum turgidum75.1776.883.48884forward
CNT30173274Brassica napusTrifolium pratense70.1561.3486.42825forward
CNT30146334Brassica napusMedicago truncatula54.9364.9984.37646forward
CNT30247994Brassica napusAvena sativa69.1354.9385.24813forward
CNT30665783Brassica napusTriticum dicoccoides70.3290.7882.83827forward
CNT30310177Brassica napusCamelina sativa89.8891.1289.51057forward
CNT30608730Brassica napusGossypium raimondii38.174.6784.15448forward
CNT30647369Brassica napusRosa chinensis35.3745.9284.13416forward
CNT30127375Brassica napusCorymbia citriodora44.4793.7385.28523forward
CNT30350898Brassica napusEragrostis tef72.9677.0285.78858forward
CNT30480841Brassica napusArabidopsis halleri33.9364.2591.73399forward
CNT30355521Brassica napusLactuca sativa60.8875.0585.61716forward
CNT30151899Brassica napusPrunus persica27.5529.3788.27324forward
CNT30427751Brassica napusPapaver somniferum73.4759.6786.69864forward
CNT30706337Brassica napusPrunus avium7171.6186.71835forward
CNT3052982Brassica napusAmborella trichopoda24.421.9486.41287forward
CNT3024315Brassica napusPopulus trichocarpa58.6790.4382.61690forward
CNT3037774Brassica napusCucumis melo38.4458.4786.95452forward
CNT30101006Brassica napusOryza rufipogon33.4256.4786.51393forward
CNT30580076Brassica napusEchinochloa crusgalli33.7630.0186.9397forward
CNT30113122Brassica napusFicus carica37.9353.7385.87446forward
CNT30724026Brassica napusLupinus angustifolius69.356.685.4815forward
CNT3050294Brassica napusCucumis sativus44.9886.384.31529forward

Expression of CNT30541587

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENLTAM*

Sequence

>CNT30541587
TTAACCGCAGGAACGACATACCATATTCATTATAAAGAGAGCATCCAAAATAGTTCAGAATCCGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAGT
AATGAGTAGCTTCACCACCTCCGATCAAGAACCTAGTTAAGTGAACAAAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAGACAAGCGGCCAAATACA
AAACTAATGTAACCAAAAAACTAAAATTGTCTTTCCATTCAACTGCGGATGATTGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGC
CTTGGTCACCTTGGCTCCGGTTGGGTCCTTCTTGTCAACGCTCTTGATGACGCCGACTGCAACAGTCTGCCTCATGTCCCTCACGGCGAAACGTCCAAGA
GGTGGGTACTCAGAGAAGGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCGTCACCATTCTTCAAGAACTTGGGCTCCTTCTCGA
TCTCTTTACCAGAACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACGGCAATGTGAGAAGTGTGGCAGTCAAGAACTGGAGCGTAACCGTTACC
AATCTGCCCCGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTGGCAGCACCCTTTGCTGGATCATCCTTGGAGTTGGATGCAACGTAACCACGCTTG
AGATCCTTGACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCTCAACGGACTTAACCTCAG
TGGTCAACCCTGAAGGAGCAAAGGTGACAACCATACCAGGCTTGAGCATACCGGTTTCAACACGACCCACTGGCACCGTTCCAATACCACCAATCTTGTA
GACATCCTGAAGTGGGAGACGGAGGGGCTTGTCTGAGGGCCTCTTGGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCA
AGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGGACGAATGGGATTTTGTCCGGGTTGTACCCAACCTTCTTCAAGTAGGAAG
ACACCTCCTTGATAATCTCATCGTACCTAGCCTTGGAGTACTTAGGGGTAGTAGCATCCATCTGCAACAAGAAAAC