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Detailed information on CNT30727590


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONMEST004097, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Corchorus capsularisOryza sativa64.2855.387.26871forward
CNT30677701Corchorus capsularisSetaria viridis50.3399.5688.86682forward
CNT30521010Corchorus capsularisSetaria italica64.2179.8287.93870forward
CNT30535563Corchorus capsularisEucalyptus grandis56.994.4988.2771forward
CNT30316757Corchorus capsularisCorylus avellana54.6161.7789.46740forward
CNT30546799Corchorus capsularisIpomoea triloba62.3668.8187.69845forward
CNT30518094Corchorus capsularisJuglans regia63.0391.2487.24854forward
CNT3021232Corchorus capsularisCitrullus lanatus63.6969.7184.94863forward
CNT30380230Corchorus capsularisManihot esculenta63.3235.3787.18858forward
CNT30194937Corchorus capsularisPisum sativum63.5486.1985.83861forward
CNT30160120Corchorus capsularisPistacia vera64.6570.4789.61876forward
CNT30387246Corchorus capsularisTriticum turgidum64.2875.6784.39871forward
CNT30541587Corchorus capsularisBrassica napus63.3272.9686.6858forward
CNT30233993Corchorus capsularisBrassica oleracea64.1380.9186.88869forward
CNT30173274Corchorus capsularisTrifolium pratense62.1462.687.65842forward
CNT30246955Corchorus capsularisAvena sativa62.5147.9986.19847forward
CNT30310418Corchorus capsularisCamelina sativa63.9974.7486.62867forward
CNT3059230Corchorus capsularisArabidopsis lyrata63.1771.2187.27856forward
CNT3077051Corchorus capsularisBrassica juncea64.1375.386.54869forward
CNT30614135Corchorus capsularisArabis alpina53.5146.4786.9725forward
CNT30449495Corchorus capsularisSaccharum spontaneum63.9971.2486.27867forward
CNT30132437Corchorus capsularisLolium perenne63.8471.9682.77865forward
CNT3011166Corchorus capsularisZea mays64.5861.8885.94875forward
CNT30350898Corchorus capsularisEragrostis tef64.3578.2887.96872forward
CNT30355521Corchorus capsularisLactuca sativa51.2972.8586.19695forward
CNT30427598Corchorus capsularisPapaver somniferum74.3973.6885.521008forward
CNT30706337Corchorus capsularisPrunus avium60.8170.6786.41824forward
CNT30496874Corchorus capsularisDigitaria exilis64.2177.6187.7870forward
CNT30594443Corchorus capsularisEragrostis curvula64.4375.1987.63873forward
CNT30603820Corchorus capsularisOryza punctata64.2880.7287.37871forward
CNT30724026Corchorus capsularisLupinus angustifolius62.6658.9687.4849forward

Expression of CNT30727590

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MSLTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSFPDRLSIFVKSSANLTAMWEVWQSSTGAYPFPIWPGWFMMIT*

>peptide 2 (54 aa)
MVHLDRLNFSGQSRGTKGDNHTRLKNTSLNTTNRDSSNTTNLVDILKWETEWLV*

>peptide 3 (37 aa)
IVALEEELLICFKYAENTTFGIKICLLVNTETFNRNS*

Sequence

>CNT30727590
AAATCGTAGCCCTGGAGGAAGAGCTCTTAATATGCTTCAAATATGCAGAAAACACCACATTTGGCATTAAAATATGCTTACTTGTGAACACAGAAACATT
TAACAGAAATTCTTAAATTAAGATTGTTTTAAAAGCATCCAACTACAATTTTAAAGCAGACATTGACAAATTTGTAGAAGTCTCAATCAAAACATAACAG
ATAGAAAGCATATAAAAGTCATCCACAAAACCGCAATGTAAAATACTCAGAATAAATTAAAGACCAAAATTAAAAGACCAACTATCATCCTAGCTGTAAT
AGTACTCTCTCTCAAAAGCAACCTCATTTCTTCTTGGCAGCAGACTTGGTGACCTTAGCACCAGATGGGTCCTTCTTCTCAACACTCTTGATAACACCAA
CAGCAACAGTCTGCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAAGTCTCCACAACCATGGGCTTAGTGGGAATCATCTTAAC
CATCCCGGCATCACCGTTCTTCAAGAACTTAGGCTCCTTCTCGAGCTCCTTTCCAGATCGTCTGTCAATCTTTGTCAAGAGTTCAGCAAACTTGACAGCA
ATGTGGGAGGTGTGGCAATCGAGCACCGGGGCGTATCCATTTCCGATCTGGCCAGGGTGGTTCATGATGATAACCTGAGAGGTGAAGTTGGCAGCTTCCT
TGGCAGGATCATCCTTAGAGTTAGATGCGACGTAACCACGCTTGAGATCCTTAACAGCAACGTTCTTAACATTGAACCCGACATTGTCACCGGGGAGAGC
CTCCTGGAGAGCTTCATGGTGCATCTCGACAGACTTAACTTCAGTGGTCAGTCCAGAGGGACCAAAGGTGACAACCATACCAGGCTTAAGAACACCAGTC
TCAACACGACCAACAGGGACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCATTGA
TCTGGTCAAGAGCCTCAAGGAGTGTTGGACCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTATCACCCTCAAAACCAGAGATTGGGACGAA
TGGGATTTTGTCTGGGTTGTAACCAACCTTCTTCAGGTAAGAAGAGACTTCCTTAACAATTTCATCATACCTTGCCTTGGAGTACTTTGGAGTTGTTGGT
TGACCTCTCAATCATGTTATCACCCTCAAAACCAGAGATTGGGACGAATGGGATTTTGTCTGGGTTGTAACCAACCTTCTTCAGGTAAGAAGAGACTTCC
TTAACAATTTCATCATACCTTGCCTTGGAGTACTTTGGAGTTGTGGCATCCATCT