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Detailed information on CNT30614135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Arabis alpinaOryza sativa48.2747.8186.32753forward
CNT30677701Arabis alpinaSetaria viridis43.0197.9687.03671forward
CNT30521010Arabis alpinaSetaria italica48.0168.7286.38749forward
CNT30639730Arabis alpinaNymphaea colorata34.6858.8784.29541forward
CNT30535563Arabis alpinaEucalyptus grandis47.8891.5484.74747forward
CNT30316757Arabis alpinaCorylus avellana47.4461.7786.76740forward
CNT30546799Arabis alpinaIpomoea triloba47.8260.7586.73746forward
CNT30518094Arabis alpinaJuglans regia47.579.1785.29741forward
CNT30371709Arabis alpinaArabidopsis thaliana39.4295.593.82615forward
CNT30274113Arabis alpinaChenopodium quinoa28.2770.6786.62441forward
CNT3021232Arabis alpinaCitrullus lanatus47.1859.4584.1736forward
CNT30727590Arabis alpinaCorchorus capsularis46.4753.5186.9725forward
CNT30380230Arabis alpinaManihot esculenta47.7630.7184.7745forward
CNT30525464Arabis alpinaPhaseolus vulgaris37.37103.1982.5583forward
CNT30629544Arabis alpinaVigna unguiculata25.3852.3886.62396forward
CNT30194937Arabis alpinaPisum sativum46.9973.3786.08733forward
CNT30160120Arabis alpinaPistacia vera47.7659.9487.38745forward
CNT3093993Arabis alpinaSolanum tuberosum29.7488.8990.09464forward
CNT30287202Arabis alpinaTriticum aestivum30.1965.5185.77471forward
CNT30224124Arabis alpinaHordeum vulgare18.7898.6589.42293forward
CNT30387246Arabis alpinaTriticum turgidum48.0865.1684750forward
CNT30564256Arabis alpinaActinidia chinensis38.5351.6385.86601forward
CNT3084148Arabis alpinaVigna radiata37.6936.185.2588forward
CNT30541591Arabis alpinaBrassica napus48.7264.6392.24760forward
CNT30234210Arabis alpinaBrassica oleracea47.8267.7691.55746forward
CNT30173274Arabis alpinaTrifolium pratense45.0652.2786.34703forward
CNT30246955Arabis alpinaAvena sativa48.0842.4986.4750forward
CNT30665783Arabis alpinaTriticum dicoccoides45.1977.3983.26705forward
CNT30310177Arabis alpinaCamelina sativa47.6364.0592.46743forward
CNT3059230Arabis alpinaArabidopsis lyrata48.0162.3192.12749forward
CNT3077051Arabis alpinaBrassica juncea47.6964.4792.74744forward
CNT30598511Arabis alpinaFraxinus excelsior30.6473.4383.68478forward
CNT30449495Arabis alpinaSaccharum spontaneum46.9260.1586.07732forward
CNT30132437Arabis alpinaLolium perenne48.0162.3184.65749forward
CNT3011166Arabis alpinaZea mays47.7652.6984.97745forward
CNT30608684Arabis alpinaGossypium raimondii26.1596.9191.42408forward
CNT30646927Arabis alpinaRosa chinensis20.3294.3590.54317forward
CNT30127375Arabis alpinaCorymbia citriodora33.2793.0183.82519forward
CNT30689637Arabis alpinaTriticum urartu29.7447.5490.3464forward
CNT30350898Arabis alpinaEragrostis tef46.9265.7186.89732forward
CNT30480841Arabis alpinaArabidopsis halleri25.4563.9392.19397forward
CNT30368770Arabis alpinaSorghum bicolor44.8197.6386.55699forward
CNT30355521Arabis alpinaLactuca sativa45.9675.1687.73717forward
CNT30427751Arabis alpinaPapaver somniferum47.1250.7687.21735forward
CNT30570869Arabis alpinaVitis vinifera21.3510090.39333forward
CNT30706337Arabis alpinaPrunus avium47.5663.6486.39742forward
CNT30645139Arabis alpinaCannabis sativa15.0685.1491.49235forward
CNT3024422Arabis alpinaPopulus trichocarpa34.1769.8684.62533forward
CNT30120974Arabis alpinaCitrus clementina29.8176.7391.61465forward
CNT3037774Arabis alpinaCucumis melo29.5559.6486.77461forward
CNT30148140Arabis alpinaBrachypodium distachyon20.3883.6887.42318forward
CNT30101083Arabis alpinaOryza rufipogon29.0484.8388.96453forward
CNT30496874Arabis alpinaDigitaria exilis48.0166.8285.98749forward
CNT30116334Arabis alpinaOryza nivara27.377088.99427forward
CNT30594443Arabis alpinaEragrostis curvula48.0864.686.27750forward
CNT30603820Arabis alpinaOryza punctata47.9569.3286.23748forward
CNT30176122Arabis alpinaVigna angularis46.6764.3182.97728forward
CNT30724026Arabis alpinaLupinus angustifolius45.5849.3886.22711forward
CNT3050294Arabis alpinaCucumis sativus33.9186.383.93529forward

Expression of CNT30614135

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAAPLAGSSLEFEATYPRLRSLTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

>peptide 2 (83 aa)
MLTGLSILRDTSFETTSGGVNDENSTISLGGTSNHVLDEITMSRSINDCAVVFGGLELPESNINGDTTFTLSLKFVQHPCVLE*

>peptide 3 (54 aa)
MVHLNRLNLSGQPCRSKGHNHTRLDHTSLNTSHWHRSNTTNLVNILKGKTEGLV*

>peptide 4 (49 aa)
MKVSTTIGLVGVILTIPASPFFKNLGSFSISLPERLSILVKISVNLTAM*

>peptide 5 (44 aa)
MVIPRSRSALSLSNTHAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 6 (30 aa)
MMRTAQSAWEVPVIMFLMKSRCPGASMTVQ*

>peptide 7 (30 aa)
MTFCSSQQLPSRTSQSHACQYHQACRSSDQ*

Sequence

>CNT30614135
AATTATCCAGAAACTGCATAATTGAAAACCATAATAAGTCTCAGAGGTATCCAAAAAGGAGGTAGAGAGAAGAAATGTCGCAGAAAATAAAAGAAAAAAG
AGGCTCAAACGCCATTAAAGTTTCAAACCAAAGAAAACCATAACAGAGTCGATCATAACGAAAGTCTCATCATTTAGCTCCCTTCTTCACTGCAGCCTTG
GTCACCTTGGCTCCGGGTACTCCATGAAGGTCTCAACAACCATAGGCTTGGTTGGAGTCATCTTAACCATACCAGCATCACCATTCTTCAAGAACTTAGG
CTCCTTCTCGATCTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGTGAACTTGACTGCAATGTGAGAGGTGTGGCAATCGAGAACTGGGGCG
TAACCGTTACCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTAGCAGCACCCTTAGCTGGATCATCCTTGGAGTTTGAGGCAACAT
ACCCACGCTTAAGATCCTTGACAGCAACATTCTTAACGTTGAATCCAACATTGTCACCTGGAAGTGCCTCAAGAAGAGACTCATGGTGCATCTCAACAGA
CTTAACCTCAGTGGTCAACCCTGTAGGAGCAAAGGTCACAACCATACCAGGCTTGATCATACCAGTCTCAACACGTCCCACTGGCACCGTTCCAATACCA
CCAATCTTGTAAACATCCTGAAGGGGAAGACGGAGGGGCTTGTCTGATGGCCTCTTTGGCTCGTTGATAGCATCAAGAGCCTCAAGGAGAGTTGGTCCCT
TGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCTCCCTCAAAACCAGAGATAGGAACGAATGGGATTTTGTCAGGGTTGTATCCAACCTTCTT
CAGGTAAGAAGACACCTCCTTAACAATTTCATCGTACCTACCCTTGGAGTACTTGGGGGTAGTAGCATCCATCTGTAAGAAGAAACAAACAGCAAAATAA
GTATCAGCATCACAACAAACCATGAAGAAACAAACACAAACAGTGAAACAATATAAGAATCACACCAAATGATCATAAATTGAGAAGATACTTCACCTTG
TTACAGCAGCAAATCATCTGCTTGACACCAAGGGTGAAAGCAAGAAGAGCATGCTCACGGGTCTGTCCATCCTTAGAGATACCAGCTTCGAAACCACCAG
TGGTGGAGTCAATGATGAGAACAGCACAATCAGCCTGGGAGGTACCAGTAATCATGTTCTTGATGAAATCACGATGTCCAGGAGCATCAATGACTGTGCA
GTAGTATTTGGTGGTCTCGAACTTCCAGAGAGCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTAAGTTTGTCCAACACCCATGCGTACTTGAAT
GACCTTTTGTTCATCTCAGCAGCTTCCTTCTCGAACCTCTCAATCACACGCTTGTCAATACCACCAAGCTTGTAGATCAAGTGACCAGTAGTGGTCGATT
TTCCAGAGTCGACATGGCCAATGACCACAATGTTGATGTGAAACTTCTCTTTACCCATAG