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Detailed information on CNT30480841


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 3e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Arabidopsis halleriOryza sativa63.9325.2188.16397forward
CNT30677701Arabidopsis halleriSetaria viridis62.6456.7987.15389forward
CNT30520765Arabidopsis halleriSetaria italica63.9319.5488.16397forward
CNT30639730Arabidopsis halleriNymphaea colorata55.5637.5481.45345forward
CNT30535563Arabidopsis halleriEucalyptus grandis63.9348.6582.62397forward
CNT30316757Arabidopsis halleriCorylus avellana63.9333.1484.89397forward
CNT30546799Arabidopsis halleriIpomoea triloba63.9332.3385.39397forward
CNT30518094Arabidopsis halleriJuglans regia63.9342.4185.64397forward
CNT30371709Arabidopsis halleriArabidopsis thaliana63.9361.6596.73397forward
CNT30618435Arabidopsis halleriSesamum indicum47.6760.2985.47296forward
CNT30274113Arabidopsis halleriChenopodium quinoa60.3960.186.13375forward
CNT3021232Arabidopsis halleriCitrullus lanatus62.1631.1885.23386forward
CNT30727585Arabidopsis halleriCorchorus capsularis63.9329.4586.65397forward
CNT30380230Arabidopsis halleriManihot esculenta63.9316.3684.38397forward
CNT30525464Arabidopsis halleriPhaseolus vulgaris60.0666.0282.57373forward
CNT30629544Arabidopsis halleriVigna unguiculata59.2648.6884.78368forward
CNT30505987Arabidopsis halleriNicotiana attenuata40.5876.685.32252forward
CNT30160120Arabidopsis halleriPistacia vera62.6431.385.86389forward
CNT30287202Arabidopsis halleriTriticum aestivum51.8544.7884.47322forward
CNT30224987Arabidopsis halleriHordeum vulgare43.3291.1988.1269forward
CNT30387246Arabidopsis halleriTriticum turgidum63.9334.4986.9397forward
CNT30564256Arabidopsis halleriActinidia chinensis63.1233.6887.5392forward
CNT3084148Arabidopsis halleriVigna radiata63.1224.0683.42392forward
CNT30541587Arabidopsis halleriBrassica napus64.2533.9391.73399forward
CNT30238010Arabidopsis halleriBrassica oleracea64.2532.691.48399forward
CNT30509820Arabidopsis halleriSolanum lycopersicum32.6990.6288.18203forward
CNT30173274Arabidopsis halleriTrifolium pratense63.9329.5284.38397forward
CNT30146334Arabidopsis halleriMedicago truncatula47.6729.7886.82296forward
CNT30439068Arabidopsis halleriAegilops tauschii29.7933.788.65185forward
CNT30246955Arabidopsis halleriAvena sativa63.9322.4987.66397forward
CNT30665783Arabidopsis halleriTriticum dicoccoides61.3541.8286.61381forward
CNT30310177Arabidopsis halleriCamelina sativa63.9334.2295.47397forward
CNT3059230Arabidopsis halleriArabidopsis lyrata63.9333.0397.48397forward
CNT3077051Arabidopsis halleriBrassica juncea63.9334.492.95397forward
CNT30614135Arabidopsis halleriArabis alpina63.9325.4592.19397forward
CNT30598511Arabidopsis halleriFraxinus excelsior48.1545.9385.28299forward
CNT30449969Arabidopsis halleriSaccharum spontaneum63.9331.4686.65397forward
CNT30132437Arabidopsis halleriLolium perenne63.9333.0385.39397forward
CNT3011166Arabidopsis halleriZea mays63.9328.0886.9397forward
CNT30608730Arabidopsis halleriGossypium raimondii52.554.3384.36326forward
CNT30651330Arabidopsis halleriRosa chinensis31.444.2287.69195forward
CNT30203418Arabidopsis halleriHelianthus annuus27.3841.5687.06170forward
CNT30127375Arabidopsis halleriCorymbia citriodora54.9161.1183.28341forward
CNT30624959Arabidopsis halleriDaucus carota54.7510082.35340forward
CNT30685098Arabidopsis halleriTriticum urartu59.925.3186.83372forward
CNT30350898Arabidopsis halleriEragrostis tef63.9335.6487.15397forward
CNT30368387Arabidopsis halleriSorghum bicolor63.934686.65397forward
CNT30355521Arabidopsis halleriLactuca sativa63.9341.6187.91397forward
CNT30151899Arabidopsis halleriPrunus persica51.6929.185.36321forward
CNT30427756Arabidopsis halleriPapaver somniferum63.4530.2187.06394forward
CNT30706337Arabidopsis halleriPrunus avium63.9334.0585.39397forward
CNT3052982Arabidopsis halleriAmborella trichopoda47.1822.484.98293forward
CNT3024315Arabidopsis halleriPopulus trichocarpa55.8845.4883.29347forward
CNT3037774Arabidopsis halleriCucumis melo59.5847.8783.51370forward
CNT30100761Arabidopsis halleriOryza rufipogon52.9857.4287.23329forward
CNT30580076Arabidopsis halleriEchinochloa crusgalli37.8417.7688.51235forward
CNT30496874Arabidopsis halleriDigitaria exilis63.9335.4188.66397forward
CNT30594443Arabidopsis halleriEragrostis curvula63.9334.1987.41397forward
CNT30603788Arabidopsis halleriOryza punctata63.9333.788.66397forward
CNT30176122Arabidopsis halleriVigna angularis60.0632.9583.11373forward
CNT30113122Arabidopsis halleriFicus carica62.6446.8785.6389forward
CNT30726405Arabidopsis halleriLupinus angustifolius60.8770.3985.19378forward
CNT3050294Arabidopsis halleriCucumis sativus63.4564.2784.52394forward

Expression of CNT30480841

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAAPFAGSSLELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

Sequence

>CNT30480841
CAAGGAAGCACGTTTGCTTAGCTCCGCCACCTCCGATCAAGAACCCAATTACGAGAACAACGCTCTGATGGGGAAATAACGAAACAGGAACACAGACAAG
CGACCAGATACCAAACTATTGTAAAAAAACTAACATTGTCCTTTGATTCACCTGCGGAAGATAGATTTTTGAAGATGGTTCACTTCGCACCCTTCTTGAC
GGCAGCCTTGGTAACCTTGGCTCCGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGCACCCTTTGCAGGGTCATCCTTGGAGTTGGAGGCGA
CGTACCCTCTCTTAAGATCCTTCACGGCAACATTCTTAACATTGAACCCAACGTTGTCACCAGGAAGTGCCTCAAGAAGAGATTCGTGGTGCATCTCAAC
AGACTTGACCTCAGTGGTCAACCCTGTGGGAGCAAAGGTCACGACCATACCAGGCTTGATCATACCAGTCTCAACACGTCCCACTGGCACCGTTCCAATA
CCACCAATCTTGTAGACATCCTGGAGTGGGAGACGCAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTC
CCTTGTACCAGTCAAGATTGG