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Detailed information on CNT3079066


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535563Brassica junceaEucalyptus grandis66.3397.0685.23792forward
CNT30194937Brassica junceaPisum sativum73.2887.5984.91875forward
CNT30287202Brassica junceaTriticum aestivum39.4565.5186.2471forward
CNT30387246Brassica junceaTriticum turgidum74.0476.884.28884forward
CNT30440878Brassica junceaAegilops tauschii20.1830.6690.87241forward
CNT30449495Brassica junceaSaccharum spontaneum73.1271.7384.99873forward
CNT30355521Brassica junceaLactuca sativa59.9775.0586.31716forward
CNT30603788Brassica junceaOryza punctata73.3774.3686.53876forward
CNT30113122Brassica junceaFicus carica40.3758.0784.85482forward

Expression of CNT3079066

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLKPTLSPGSASTRDSWCISTDLTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENLTAMWEVWQSRTGA*

Sequence

>CNT3079066
AATAAACGAAAGGAAGAAAATTAGACACGACAATAACCGCAGGAATACCATATTCATTATAAAAGAGTATCCAAAATAGTTCAGAATCCGAAAGCAAAAA
GTAAAAGAAAAAAGGAAGCTAGAGTGCTGAGTAGCTTCGCCACCTCCGATCAAGAACCCAGTTACGAGAACAGAGCTCCGACGGGGAAGAAACAAACCTG
AAACACAAACATGCGACCAAATACCATACTAAAGTAAAAAAACTAAAATTGTCTTTTGATTCAACTGCGGATGATAGAGTTTTCCTCGAGGTAGTTCACT
TGGCACCCTTCTTGACGGCAGCCTTGGTAACCTTGGCTCCGGTCGGGTCCTTCTTGTCAACGCTCTTGATGACACCGACTGCAACAGTCTGCCTCATGTC
CCTCACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAGGTCTCAACAACCATGGGCTTGGTCGGAGTCATCTTCACCATACCAGCGTCACCATTCTTC
AAGAACTTGGGCTCCTTCTCGATCTCTTTACCAGAACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACGGCAATGTGGGAAGTGTGGCAGTCGA
GAACTGGAGCGTAACCGTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTGGCAGCACCCTTAGCTGGGTCATCCTTGGAGTT
GGACGCAACATACCCACGCTTGAGATCCTTGACAGCGACATTCTTGACATTGAAACCCACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGC
ATCTCCACGGACTTAACCTCAGTGGTCAACCCTGAAGGAGCAAAGGTCACAACCATACCAGGCTTGAGCATACCAGTCTCAACACGACCCACTGGCACCG
TTCCAATACCACCGATCTTGTAGACATCCTGAAGTGGGAGACGGAGGGGCTTGTCGGAGGGCCTCTTTGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAG
GGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATGGGGACGAATGGGATTTTGTCAGGGTTGTAC
CCAACCTTCTTCAAGTAGGAAGACACTTCCTTGATAATCTCATCGTACCTAGCCTTAGAGTATTTGGGGGTAGTGGCATCCATCTGAAACAAGG