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Detailed information on CNT30580076


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 2e-114

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Echinochloa crusgalliOryza sativa31.2226.2291.28413forward
CNT30672978Echinochloa crusgalliSetaria viridis35.6860.7593.22472forward
CNT30520765Echinochloa crusgalliSetaria italica30.4619.8392.06403forward
CNT30535563Echinochloa crusgalliEucalyptus grandis30.5449.5186.39404forward
CNT30316757Echinochloa crusgalliCorylus avellana27.1429.9789.69359forward
CNT30546678Echinochloa crusgalliIpomoea triloba29.3328.8586.86388forward
CNT30518292Echinochloa crusgalliJuglans regia30.2387.1586.75400forward
CNT30371709Echinochloa crusgalliArabidopsis thaliana19.2739.690.2255forward
CNT3021232Echinochloa crusgalliCitrullus lanatus30.5432.6386.39404forward
CNT30727591Echinochloa crusgalliCorchorus capsularis30.5414.9688.37404forward
CNT30380230Echinochloa crusgalliManihot esculenta30.4616.6187.59403forward
CNT30629687Echinochloa crusgalliVigna unguiculata24.1916.287.19320forward
CNT30712080Echinochloa crusgalliGlycine max15.5728.4587.86206forward
CNT30287202Echinochloa crusgalliTriticum aestivum29.2553.8289.66387forward
CNT30224132Echinochloa crusgalliHordeum vulgare18.2935.2891.74242forward
CNT30387246Echinochloa crusgalliTriticum turgidum30.0134.4989.42397forward
CNT30564257Echinochloa crusgalliActinidia chinensis26.4630.5486350forward
CNT3084119Echinochloa crusgalliVigna radiata29.8622.1985.32395forward
CNT30541587Echinochloa crusgalliBrassica napus30.0133.7686.9397forward
CNT30234210Echinochloa crusgalliBrassica oleracea30.0136.0686.65397forward
CNT30146188Echinochloa crusgalliMedicago truncatula26.5344.7185.75351forward
CNT30440878Echinochloa crusgalliAegilops tauschii19.6533.0891.15260forward
CNT30246955Echinochloa crusgalliAvena sativa30.4622.8389.83403forward
CNT30310177Echinochloa crusgalliCamelina sativa29.433.5388.17389forward
CNT3059230Echinochloa crusgalliArabidopsis lyrata29.5532.5387.21391forward
CNT3077042Echinochloa crusgalliBrassica juncea29.7132.6487.02393forward
CNT30614172Echinochloa crusgalliArabis alpina47.9263.486.12634forward
CNT30449234Echinochloa crusgalliSaccharum spontaneum30.0833.1994.22398forward
CNT30132437Echinochloa crusgalliLolium perenne29.5532.5386.96391forward
CNT3015747Echinochloa crusgalliZea mays45.7384.7392.23605forward
CNT30647369Echinochloa crusgalliRosa chinensis21.6231.5788.11286forward
CNT30685098Echinochloa crusgalliTriticum urartu29.6326.6791.07392forward
CNT30350899Echinochloa crusgalliEragrostis tef30.0135.5791.94397forward
CNT30480841Echinochloa crusgalliArabidopsis halleri17.7637.8488.51235forward
CNT30355521Echinochloa crusgalliLactuca sativa26.2336.3786.46347forward
CNT30424894Echinochloa crusgalliPapaver somniferum29.5552.5587.21391forward
CNT30706335Echinochloa crusgalliPrunus avium30.0135.2989.42397forward
CNT30644842Echinochloa crusgalliCannabis sativa18.5260.6486.94245forward
CNT3037774Echinochloa crusgalliCucumis melo25.3243.3489.85335forward
CNT30101053Echinochloa crusgalliOryza rufipogon25.9341.2891.55343forward
CNT30496962Echinochloa crusgalliDigitaria exilis30.4635.8592.31403forward
CNT30116111Echinochloa crusgalliOryza nivara25.6238.7491.15339forward
CNT30594443Echinochloa crusgalliEragrostis curvula30.4634.7193.05403forward
CNT30603820Echinochloa crusgalliOryza punctata30.3937.2691.29402forward
CNT30113122Echinochloa crusgalliFicus carica22.0735.1886.3292forward
CNT30726329Echinochloa crusgalliLupinus angustifolius30.0186.6886.4397forward
CNT3050518Echinochloa crusgalliCucumis sativus18.9740.4287.25251forward

Expression of CNT30580076

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MMMTWEVKLAASLAGSSLELERLMVHLNRLHLSGQAAGSKGDNHTRLDDTSLNTTNRNSSNTTNLVHILKGETQGLV*

>peptide 2 (50 aa)
VGIIFTIPASPFFRNLGSFSSSLPDLLSILVTSSANLTAMWEVWQSSTGA*

>peptide 3 (31 aa)
GNHLHHTSVTILQELGLLLKLLARSSVNLGN*

>peptide 4 (30 aa)
WESSSPYQRHHSSGTWAPSQAPCQIFCQSW*

Sequence

>CNT30580076
GTGGGAATCATCTTCACCATACCAGCGTCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTGCCAGATCTTCTGTCAATCTTGGTAACTAGTT
CAGCAAACTTGACAGCGATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCGTTGCCGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGAGGT
GAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGCGCCTCATGGTGCATCTCAACAGACTTCACCTCAGTGGTCAGGCCGCTGGGTCCAAA
GGTGACAACCATACCAGGCTTGATGACACCAGTCTCAACACGACCAACAGGAACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGC
AGGGGCTTGTCTGAAGGCCTCTTCGGCTCATTGATCAAGTCAAGAGCCTCAAGCAGAGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCA
TGTTGTCACCCTCGAAACCAGAGATGGGAACGAAGTGAATCTTGTCAGGGTTGTATCCAACCTTCTTGAGGTAGGAAGAGACTTCCTTCACGATCTCATC
ATAACGAGCCTTTGAGTACTTGGGAGTGGTGGCATCCATCTGCAACAGAACCGAACATTATAAGCATTAAAGCAGACTCATGAGGTAGGTGAAAACAGCA
ACATGAATGCGTCCATAATCAACAGGGCATTTGTGAATACAGCACAAAAGAACTATTTCAATATTGTTTTGGAGGTCTACTAACTCAAAAGTTAGCATGT
CAACCACAGCATATGAACAGTAAGGATGCATTTTCATTATCAAACTCACCTACTTTTCATTATTATTAAGTAACGCAACCAAGGAATGCCGCATATTCCA
GCAAGTATATTAACTGAAATGATGCATCACCAGAATTGCATTATTATGTAAACTAACATTGCATTATTCTAAGGCACTGCACATTCAGTGTACTATAATT
CTATAAAATGCTAGACAGTTCATAAAATTAAACAAATATATGTAGCGTAGACAGATGGTAAACAAGCAGTCTCTAATACAGGTATCTAGCATGCTACTCA
TGTGTATTTCCTATGGAAACAAGTACCAAATTATTTAAAGCATGTAGTACAATAACTGTATGAATGTCAGCTCACAAGCAAGAGTGAAGTAGGAAGTTCC
AGAATTTTACCTTGTTGCAGCAGCAAATCATCTGCTTCACTCCAAGGGTGAAAGCAAGGAGAGCATGCTCACGGGTCTGGCCATCCTTGGAGATACCAGC
CTCAAAACCACCAGTGGTGGAAT