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Detailed information on CNT30546799


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Ipomoea trilobaOryza sativa71.9156.0687.2883forward
CNT30677701Ipomoea trilobaSetaria viridis55.5499.5687.98682forward
CNT30521010Ipomoea trilobaSetaria italica70.4479.3687.98865forward
CNT30639730Ipomoea trilobaNymphaea colorata47.4863.4483.02583forward
CNT30535563Ipomoea trilobaEucalyptus grandis64.1796.5785.91788forward
CNT30316757Ipomoea trilobaCorylus avellana61.8163.3687.09759forward
CNT30518094Ipomoea trilobaJuglans regia70.3692.3184.72864forward
CNT30377782Ipomoea trilobaArabidopsis thaliana56.1968.3286.09690forward
CNT30618435Ipomoea trilobaSesamum indicum28.3470.8889.94348forward
CNT30274113Ipomoea trilobaChenopodium quinoa37.8774.5287.1465forward
CNT3021028Ipomoea trilobaCitrullus lanatus67.1866.4383.88825forward
CNT30727590Ipomoea trilobaCorchorus capsularis68.8162.3687.69845forward
CNT30380230Ipomoea trilobaManihot esculenta70.5235.786.37866forward
CNT30525464Ipomoea trilobaPhaseolus vulgaris47.48103.1982.33583forward
CNT30194937Ipomoea trilobaPisum sativum70.4486.5984.74865forward
CNT30160120Ipomoea trilobaPistacia vera69.9569.1187.89859forward
CNT30387246Ipomoea trilobaTriticum turgidum70.4475.1583.01865forward
CNT30564256Ipomoea trilobaActinidia chinensis5052.7585.99614forward
CNT3084148Ipomoea trilobaVigna radiata46.7435.2483.97574forward
CNT30541591Ipomoea trilobaBrassica napus70.5273.6486.03866forward
CNT30233904Ipomoea trilobaBrassica oleracea70.4494.3386.59865forward
CNT30173274Ipomoea trilobaTrifolium pratense67.2661.4185.71826forward
CNT30146334Ipomoea trilobaMedicago truncatula51.7963.9884.59636forward
CNT30246955Ipomoea trilobaAvena sativa70.5249.0784.53866forward
CNT30665783Ipomoea trilobaTriticum dicoccoides66.8690.1283.31821forward
CNT30310177Ipomoea trilobaCamelina sativa70.4474.5786.71865forward
CNT3059230Ipomoea trilobaArabidopsis lyrata70.5272.0586.49866forward
CNT3078925Ipomoea trilobaBrassica juncea70.5273.9587.07866forward
CNT30614135Ipomoea trilobaArabis alpina60.7547.8286.73746forward
CNT30449495Ipomoea trilobaSaccharum spontaneum70.3670.9986.81864forward
CNT30132437Ipomoea trilobaLolium perenne70.5272.0581.87866forward
CNT3011166Ipomoea trilobaZea mays70.4461.1786.24865forward
CNT30608730Ipomoea trilobaGossypium raimondii36.3274.3385.2446forward
CNT30127375Ipomoea trilobaCorymbia citriodora42.5993.7384.89523forward
CNT30685098Ipomoea trilobaTriticum urartu41.1234.3586.53505forward
CNT30350898Ipomoea trilobaEragrostis tef70.277.3886.89862forward
CNT30480841Ipomoea trilobaArabidopsis halleri32.3363.9385.39397forward
CNT30368770Ipomoea trilobaSorghum bicolor58.3110087.15716forward
CNT30355521Ipomoea trilobaLactuca sativa58.3975.1685.22717forward
CNT30151899Ipomoea trilobaPrunus persica26.1429.187.23321forward
CNT30427598Ipomoea trilobaPapaver somniferum69.7962.6585.65857forward
CNT30706337Ipomoea trilobaPrunus avium66.6970.2486.32819forward
CNT3052982Ipomoea trilobaAmborella trichopoda27.8526.1586.84342forward
CNT3024315Ipomoea trilobaPopulus trichocarpa47.3976.2884.02582forward
CNT3037774Ipomoea trilobaCucumis melo38.6861.4586.74475forward
CNT30496874Ipomoea trilobaDigitaria exilis70.4477.1687.17865forward
CNT30594443Ipomoea trilobaEragrostis curvula70.2874.3387.14863forward
CNT30603788Ipomoea trilobaOryza punctata71.9174.9687.88883forward
CNT30176122Ipomoea trilobaVigna angularis70.676.5982.93867forward
CNT30113122Ipomoea trilobaFicus carica40.0759.2884.76492forward
CNT30724026Ipomoea trilobaLupinus angustifolius68.6558.5485.77843forward
CNT3050294Ipomoea trilobaCucumis sativus41.6983.5283.79512forward

Expression of CNT30546799

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MGIINGIQKSSHHNPLSNQVKQKLLNYQNYGCRAYNGMSN*

>peptide 2 (45 aa)
MSRASRRVGPLYQSRLVDLSIMLSPSKPEMGTNGIFSGLYPTFFM*

>peptide 3 (64 aa)
MASWARGSCQEPQEELVPCTSQGWLTSQSCCHPQNQRWEQMESFQGCIPPSSCRMTLPSQFHHT*

>peptide 4 (86 aa)
MSLTAKRPSGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVKSSANLTAMWEVWQSSTGAYPLPICPGWFMMMT*

Sequence

>CNT30546799
AACAAAAAAAAAAACAACAATTAATAAATAAAACTTGACATTGAACACGTAAATTATAACTGTTCACCCACAAAAGTCTTGCCCACATCGAAAATAGCAA
ATGGGTATAATAAATGGCATCCAGAAAAGCTCCCATCACAACCCATTAAGCAACCAAGTAAAACAAAAATTGCTCAACTATCAGAACTATGGTTGCAGGG
CATATAATGGAATGAGTAACTAGAACCATATCAAAAAGTCTTACAAAGGGGCCATACCAGAGTCTAAAGTTTATCAAAATTTAAACAATTAAAGCAAATA
AAACAGGCACTCCTTCAAAGGAGAAATTCTCATTAAGAAACACATGCTCACTTCTTCTTCTGGGCAGCCTTGGTAACCTTGGCACCAGTTGGGTCCTTCT
TGTCAACATTCTTGATAACACCAACTGCAACCGTTTGTCTCATGTCCCTCACAGCAAAACGACCAAGTGGTGGGTACTCAGAGAAGGTTTCAACAACCAT
GGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCAGACCGTCTATCAATCTTGGTC
AAAAGTTCAGCAAACTTGACTGCAATGTGGGAGGTGTGGCAGTCCAGCACCGGAGCATATCCATTACCGATCTGTCCAGGGTGGTTCATGATGATGACCT
GAGAGGTGAAGCTAGCAGCTCCTTTGGCTGGGTCATCCTTGGAGTTAGAGGCAACATAACCACGCTTAAGATCCTTCACAGCAACGTTCTTCACATTGAA
CCCAACATTGTCACCGGGAAGTGCCTCCTGAAGGGCTTCGTGGTGCATTTCAACTGACTTAACTTCAGTGGTAAGACCAGAAGGTCCGAATGTAACAACC
ATACCCGGCTTCAGGATACCAGTCTCCACACGACCCACAGGCACAGTACCAATACCACCAATCTTGTACACATCCTGAAGTGGAAGTCGGAGGGGCTTGT
CAGATGGCCTCTTGGGCTCGTGGATCATGTCAAGAGCCTCAAGAAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTGTCACC
CTCAAAACCAGAGATGGGAACAAATGGAATCTTTTCAGGGTTGTATCCCACCTTCTTCATGTAGGATGACACTTCCTTCACAATTTCATCATACCTAGCC
TTAGAGTATTTGGGGGTGGTGGCATCCA