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Detailed information on CNT30380230


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 0.0

BLAST vs NONCODE:
NONMEST004097, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Manihot esculentaOryza sativa36.1955.7585.31878forward
CNT30677701Manihot esculentaSetaria viridis28.1599.7185.94683forward
CNT30521010Manihot esculentaSetaria italica36.2380.6485.67879forward
CNT30639730Manihot esculentaNymphaea colorata22.2258.6585.16539forward
CNT30535563Manihot esculentaEucalyptus grandis32.9397.9284.48799forward
CNT30316757Manihot esculentaCorylus avellana31.1263.0287.42755forward
CNT30546799Manihot esculentaIpomoea triloba35.770.5286.37866forward
CNT30518094Manihot esculentaJuglans regia36.0393.3885.7874forward
CNT30377782Manihot esculentaArabidopsis thaliana28.468.2284.33689forward
CNT3021232Manihot esculentaCitrullus lanatus36.1570.8483.58877forward
CNT30727590Manihot esculentaCorchorus capsularis35.3763.3287.18858forward
CNT30525464Manihot esculentaPhaseolus vulgaris24.03103.1982.5583forward
CNT30629525Manihot esculentaVigna unguiculata15.9189.7787.05386forward
CNT30194937Manihot esculentaPisum sativum36.0787.5984875forward
CNT30712097Manihot esculentaGlycine max17.5235.6285.88425forward
CNT30160120Manihot esculentaPistacia vera34.8367.9887.93845forward
CNT30287202Manihot esculentaTriticum aestivum18.1861.3486.62441forward
CNT30387246Manihot esculentaTriticum turgidum36.1976.2883.37878forward
CNT30564256Manihot esculentaActinidia chinensis25.3152.7586.16614forward
CNT30541587Manihot esculentaBrassica napus36.2774.8383.75880forward
CNT30233904Manihot esculentaBrassica oleracea36.2795.9784.32880forward
CNT30173274Manihot esculentaTrifolium pratense34.4662.1685.29836forward
CNT30146334Manihot esculentaMedicago truncatula25.662.4783.9621forward
CNT30246955Manihot esculentaAvena sativa36.1949.7584.85878forward
CNT30665783Manihot esculentaTriticum dicoccoides32.8587.4983.19797forward
CNT30310418Manihot esculentaCamelina sativa36.1975.6985.65878forward
CNT3059230Manihot esculentaArabidopsis lyrata36.2773.2185.34880forward
CNT3075495Manihot esculentaBrassica juncea36.2776.9984.43880forward
CNT30614135Manihot esculentaArabis alpina30.7147.7684.7745forward
CNT30449495Manihot esculentaSaccharum spontaneum35.9971.7384.88873forward
CNT30132437Manihot esculentaLolium perenne36.2373.1381.8879forward
CNT3011166Manihot esculentaZea mays36.3162.3185.47881forward
CNT30127375Manihot esculentaCorymbia citriodora21.5693.7384.51523forward
CNT30685098Manihot esculentaTriticum urartu21.5635.5887.76523forward
CNT30350898Manihot esculentaEragrostis tef35.9478.2885.44872forward
CNT30480841Manihot esculentaArabidopsis halleri16.3663.9384.38397forward
CNT30151899Manihot esculentaPrunus persica13.9330.6486.39338forward
CNT30427598Manihot esculentaPapaver somniferum35.7463.3884.08867forward
CNT30706337Manihot esculentaPrunus avium34.4271.6186.59835forward
CNT3024428Manihot esculentaPopulus trichocarpa28.490.383.89689forward
CNT30580076Manihot esculentaEchinochloa crusgalli16.6130.4687.59403forward
CNT30496962Manihot esculentaDigitaria exilis36.1978.1185.65878forward
CNT30116334Manihot esculentaOryza nivara19.3376.8989.98469forward
CNT30594443Manihot esculentaEragrostis curvula34.7172.5285.99842forward
CNT30603820Manihot esculentaOryza punctata36.1581.2885.29877forward
CNT30176122Manihot esculentaVigna angularis35.1275.2783.22852forward
CNT30724026Manihot esculentaLupinus angustifolius34.8358.6885.21845forward
CNT3050294Manihot esculentaCucumis sativus21.6885.8184.6526forward

Expression of CNT30380230

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSLTANLPSGGYPEKVSTTMGLVGIIFTNPASPFFKNLGSFSSSLPDLRSILVKISANFTAMWEVWQSSTGA*

>peptide 2 (29 aa)
MVLSTASHCHSSTKHGWDSNYQSQTWLNN*

>peptide 3 (40 aa)
MGALYQKRGHNKQDNKQEQKVSQRGILPCCSSKSFALHQG*

>peptide 4 (34 aa)
MLEKTIVRLSNVWQIQQLLNNKAIFSSPKQEGKL*

>peptide 5 (29 aa)
MSSNKVNTHHSSGHYPYMRQIVRTFQHCI*

>peptide 6 (42 aa)
MPRSINDSAVVLGGLKLPQGNINGDTTFTLSLELVKNPGILE*

>peptide 7 (54 aa)
MMHLNRLNFSCQTSRSKGHNHSRLQDTSFHTTHWDSSNTTNLVNILKWETERLV*

>peptide 8 (51 aa)
MMMTCDVKLAASLAGSSLEFDATNPLFRSFTATFFTLNPTLSPGRASWRAS*

>peptide 9 (44 aa)
MVIPRSRSALSLSRTQAYLNDLLFISAASFSNLSITRLSIPPSL*

Sequence

>CNT30380230
TGCAAAAAATAGCCGCCTCCTTGAAATCAGAAAGAAAATCTCTCATACATAACAAAAAGTAACTAGAAAATATAGTTTCAGCATAATCACCAAAACATGG
TGTTATCTACTGCAAGCCACTGCCACTCTTCCACCAAACATGGGTGGGACAGCAACTACCAATCTCAGACATGGCTAAATAACTGAACAGAAACAAAACT
ACACGATAAATAAAAAACTCCACGCAGTATCAAAAGAAACTACGAACCCTGCGTTCACTTTCCTCCCTTCTTGGCGGCAGACTTGGTCACTTTAGCTCCA
CTTGGGTCCTTCTTCTCAACACTCTTGATCACACCAACAGCAACAGTCTGGCGCATGTCCCTAACAGCGAATCTACCCAGTGGAGGGTACCCAGAGAAAG
TCTCCACAACCATGGGCTTGGTCGGAATCATCTTCACGAACCCAGCATCACCATTTTTCAAAAACTTGGGCTCCTTCTCAAGCTCTTTGCCAGACCTACG
ATCAATCTTGGTCAAGATTTCAGCAAACTTCACAGCAATGTGGGAGGTGTGGCAATCCAGCACTGGGGCATAACCATTTCCAATCTGACCAGGGTGGTTC
ATGATGATGACCTGCGATGTAAAGTTGGCAGCCTCCTTGGCAGGATCATCCTTAGAGTTTGATGCAACAAATCCTCTCTTCAGATCTTTCACTGCAACGT
TCTTCACGTTGAACCCAACATTGTCACCAGGGAGGGCCTCCTGGAGAGCCTCATGATGCATCTCAACAGACTTAACTTCAGTTGTCAGACCAGTAGGTCC
AAAGGTCACAACCATTCCAGGCTTCAGGACACCAGTTTCCACACGACCCACTGGGACAGTTCCAATACCACCAATCTTGTAAACATCCTGAAGTGGGAGA
CGGAGAGGCTTGTCTGAGGGCCTCTTGGGCTCCTGGATCTGGTCCAGAGCTTCAAGAAGAGTTGGGCCCTTGTACCAGTCAAGGTTGGTTGATCTCTCAA
TCATATTGTCACCTTCAAACCCAGAGATGGGAACAAAAGGAATCTTATCAGGGTTGTATCCAACCTTCTTGAGGTAGGAGGAGACTTCCTTGACAATTTC
ATCGTACCTAGCCTTGGAGTACTTGGGGGTGGTGGCATCCATCTAAATAAATGATGGAACAAAGGCTTAAATGTTAGAAAAAACGATAGTAAGATTGTCA
AATGTATGGCAAATACAGCAACTATTAAACAACAAAGCCATATTCAGTTCCCCTAAGCAAGAAGGCAAACTGTAAGCCAGAGAGGTTAGGGCAGGGTCAT
TTAACACAATAAACACTAACAGCAGACAGACCACTTGCTATCAATTTAAAGCAGCCGTGGTAAACTGTTTATCTCTGAAACTTGATTCATTAACCCAAAA
GAAAAAGCAAACAAAGAAACAAACATAAAATATACAGGCAAGGAGCATGTGCTCATATACACATATAAGGCACAAAGGAAGCATATAAAACATTTGTAGA
AAGATAACAATGTGAGAGGAAGTGACATTTCTAGAAAGATCCAATGTGAAGTAAGTGAAAGTGCAAACTAATATTTTTGCACCCCGTCCACTATGAAACA
AGCATCTAACAGGAAAACATAAAATAACAGTGTTTGATAAAAAAAAGATTATCAAACCTACTATATTGACAAGTGGGGAGAGAGGGAATCGAACCCTCAA
CAGTTCAATGTGCATAACCACCGGTTTAACATCCGGAGCCATCCACCATTAGGCCATCTTCTCCCCCAAATAGACAACATCACATGTCTTCTAATAAAGT
AAACACCCATCATAGCTCTGGACATTATCCATATATGCGTCAAATAGTACGAACATTTCAACATTGCATTTGAGCTAGATGGGTGCTCTTTATCAGAAGA
GGGGCCATAACAAACAGGATAATAAACAAGAGCAGAAAGTGTCACAACGTGGAATATTACCTTGTTGCAGCAGCAAATCATTTGCTTTACACCAAGGGTG
AAAGCAAGTAGAGCATGCTCACGGGTCTGTCCATCCTTGGAAATACCAGCTTCAAAACCACCAGTGGGTAAAAGCAAGAAGGGCGTGCTCACGGGTTTGA
CCATCCTTGGAAATACCAGCTTCAAAACCACCAGTGGTGGAATCAATAATAAGGACAGCACAGTCAGCCTGTGAGGTACCAGTAATCATATTCTTAATAA
AGTCACGATGCCCAGGAGCATCAATGACAGTGCAGTAGTACTTGGTGGTCTCAAACTTCCACAAGGCAATATCAATGGTGATACCACGTTCACGCTCAGC
CTTGAGCTTGTCAAGAACCCAGGCATACTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCAAACCTCTCAATCACACGCTTGTCAATACCTCCA
AGCTTGTAGATGAGATGGCCAGTGGT