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Detailed information on CNT3050294


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 6e-122

BLAST vs NONCODE:
NONBNAT001751, E-value = 2e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Cucumis sativusOryza sativa77.6530.2284.66476forward
CNT30677701Cucumis sativusSetaria viridis81.472.8583.17499forward
CNT30521187Cucumis sativusSetaria italica79.1237.2284.95485forward
CNT30535563Cucumis sativusEucalyptus grandis80.5960.5484.21494forward
CNT30316757Cucumis sativusCorylus avellana85.4843.7484.16524forward
CNT30546799Cucumis sativusIpomoea triloba83.5241.6983.79512forward
CNT30518094Cucumis sativusJuglans regia85.4855.9884.16524forward
CNT30371709Cucumis sativusArabidopsis thaliana75.5371.8983.8463forward
CNT30274113Cucumis sativusChenopodium quinoa63.9562.8284.69392forward
CNT3021028Cucumis sativusCitrullus lanatus86.6242.7593.03531forward
CNT30727586Cucumis sativusCorchorus capsularis86.341.0185.82529forward
CNT30380230Cucumis sativusManihot esculenta85.8121.6884.6526forward
CNT30525464Cucumis sativusPhaseolus vulgaris66.2371.8687.19406forward
CNT30629544Cucumis sativusVigna unguiculata64.652.3887.63396forward
CNT30160120Cucumis sativusPistacia vera83.5241.1986.33512forward
CNT30287202Cucumis sativusTriticum aestivum64.9355.3583.67398forward
CNT30387246Cucumis sativusTriticum turgidum75.6940.3183.41464forward
CNT30564257Cucumis sativusActinidia chinensis81.0843.3784.51497forward
CNT3084148Cucumis sativusVigna radiata83.0331.2585.85509forward
CNT30541587Cucumis sativusBrassica napus86.344.9884.31529forward
CNT30238010Cucumis sativusBrassica oleracea81.5740.8585.4500forward
CNT30173274Cucumis sativusTrifolium pratense84.3438.4484.33517forward
CNT30248159Cucumis sativusAvena sativa77.6543.4784.03476forward
CNT30665783Cucumis sativusTriticum dicoccoides71.7848.384.77440forward
CNT30310177Cucumis sativusCamelina sativa86.345.685.26529forward
CNT3059440Cucumis sativusArabidopsis lyrata86.388.1784.69529forward
CNT3077051Cucumis sativusBrassica juncea85.4845.4184.92524forward
CNT30614135Cucumis sativusArabis alpina86.333.9183.93529forward
CNT30598511Cucumis sativusFraxinus excelsior64.9361.1485.18398forward
CNT30449495Cucumis sativusSaccharum spontaneum77.6539.1185.5476forward
CNT30132437Cucumis sativusLolium perenne72.5937.0282.47445forward
CNT3011166Cucumis sativusZea mays85.8137.283.46526forward
CNT30608730Cucumis sativusGossypium raimondii53.6754.8384.8329forward
CNT30651330Cucumis sativusRosa chinensis39.3154.6588.38241forward
CNT30203420Cucumis sativusHelianthus annuus41.1150.283.73252forward
CNT30127375Cucumis sativusCorymbia citriodora63.1369.3585.01387forward
CNT30624959Cucumis sativusDaucus carota54.6598.5384.48335forward
CNT30685098Cucumis sativusTriticum urartu73.7430.7583.85452forward
CNT30350898Cucumis sativusEragrostis tef77.9842.9185.98478forward
CNT30480841Cucumis sativusArabidopsis halleri64.2763.4584.52394forward
CNT30368770Cucumis sativusSorghum bicolor85.4873.1883.97524forward
CNT30355521Cucumis sativusLactuca sativa84.3454.1984.53517forward
CNT30151899Cucumis sativusPrunus persica54.6530.3784.48335forward
CNT30427756Cucumis sativusPapaver somniferum86.340.5784.5529forward
CNT30706337Cucumis sativusPrunus avium86.345.3784.5529forward
CNT3024315Cucumis sativusPopulus trichocarpa64.1151.5184.99393forward
CNT3037774Cucumis sativusCucumis melo74.0658.7385.46454forward
CNT30100761Cucumis sativusOryza rufipogon55.6359.5184.75341forward
CNT30496874Cucumis sativusDigitaria exilis81.444.5184.57499forward
CNT30594443Cucumis sativusEragrostis curvula77.654184.66476forward
CNT30603788Cucumis sativusOryza punctata75.6939.3984.7464forward
CNT30176122Cucumis sativusVigna angularis73.7439.9385.62452forward
CNT30113122Cucumis sativusFicus carica80.2659.2882.93492forward
CNT30724026Cucumis sativusLupinus angustifolius86.336.7485.26529forward

Expression of CNT3050294

Peptides detected in this lncRNA

>peptide 1 (66 aa)
RRGLSDGLLGSWIRSRASRRVGPLYQSRCVAIEYRCITISNLSWMVHDDNLGREIGSFLGRIILGI*

>peptide 2 (47 aa)
TKGFVRWPLRLLDQIESLKKGRSLVPVEMCGNRVQVHNHFQSVLDGS*

Sequence

>CNT3050294
GACGAAGGGGTTTGTCAGATGGCCTCTTAGGCTCTTGGATCAGATCGAGAGCCTCAAGAAGGGTCGGTCCCTTGTACCAGTCGAGATGTGTGGCAATCGA
GTACAGGTGCATAACCATTTCCAATCTGTCCTGGATGGTTCATGATGATAACTTGGGACGTGAAATTGGCAGCTTCCTTGGCAGGATCATCCTTGGAATT
TGAGGCAACATAACCACGCTTGAGATCCTTCACAGCAACATTCTTCACGTTGAACCCCACGTTGTCACCAGGGAGAGCTTCTTGGAGAGCTTCGTGGTGC
ATCTCCACAGACTTAACTTCAGTAGTCAGTCCAGATGGAGCAAAGGTTACCACCATACCAGGCTTTATAATGCCAGTTTCAACACGACCCACTGGAACAG
TTCCAATACCTCCAATCTTGTAGACATCCTGAAGTGGAAGACGAAGGGGTTTGTCAGATGGCCTCTTAGGCTCTTGGATCAGATCGAGAGCCTCAAGAAG
GGTCGGTCCCTTGTACCAGTCGAGATTGGTGGATCTTTCAATCATGTTGTCACCTTCAAATCCAGAGATGGGGACAAAGGGGATTTTGTCCGGGTTGTAG
CCAACTTTCTTGA