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Detailed information on CNT30496874


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Digitaria exilisNymphaea colorata52.9964.6485.02594forward
CNT30535563Digitaria exilisEucalyptus grandis69.6795.7187.07781forward
CNT30316757Digitaria exilisCorylus avellana65.7461.5287.38737forward
CNT30546799Digitaria exilisIpomoea triloba77.1670.4487.17865forward
CNT30518094Digitaria exilisJuglans regia71.986.1186.48806forward
CNT30371709Digitaria exilisArabidopsis thaliana57.4510088.35644forward
CNT3021232Digitaria exilisCitrullus lanatus78.2370.8484.04877forward
CNT30727590Digitaria exilisCorchorus capsularis77.6164.2187.7870forward
CNT30525464Digitaria exilisPhaseolus vulgaris52.1103.3683.05584forward
CNT30712097Digitaria exilisGlycine max3835.7184.74426forward
CNT30287202Digitaria exilisTriticum aestivum42.5566.3489.1477forward
CNT30387246Digitaria exilisTriticum turgidum78.8676.888.12884forward
CNT30564256Digitaria exilisActinidia chinensis54.2452.2390.13608forward
CNT30238010Digitaria exilisBrassica oleracea78.3271.7385.76878forward
CNT30440472Digitaria exilisAegilops tauschii29.5355.6392.45331forward
CNT30310177Digitaria exilisCamelina sativa78.1475.5286.64876forward
CNT3059230Digitaria exilisArabidopsis lyrata78.3273.0486.22878forward
CNT3077042Digitaria exilisBrassica juncea78.3272.9286.79878forward
CNT30614135Digitaria exilisArabis alpina66.8248.0185.98749forward
CNT30598511Digitaria exilisFraxinus excelsior42.9173.8987.11481forward
CNT30449495Digitaria exilisSaccharum spontaneum79.2172.9790.65888forward
CNT30132437Digitaria exilisLolium perenne78.8673.5487.22884forward
CNT3011166Digitaria exilisZea mays79.0462.6692.21886forward
CNT30608730Digitaria exilisGossypium raimondii39.774.1787.19445forward
CNT30127375Digitaria exilisCorymbia citriodora46.6593.7387.38523forward
CNT30685098Digitaria exilisTriticum urartu47.135.9290.72528forward
CNT30480841Digitaria exilisArabidopsis halleri35.4163.9388.66397forward
CNT30427598Digitaria exilisPapaver somniferum77.5263.5285.39869forward
CNT3024315Digitaria exilisPopulus trichocarpa56.6583.2285.2635forward
CNT30101006Digitaria exilisOryza rufipogon35.5957.3391.98399forward
CNT30176122Digitaria exilisVigna angularis7675.2783.57852forward
CNT30113122Digitaria exilisFicus carica43.0958.1986.75483forward
CNT3050294Digitaria exilisCucumis sativus44.5181.484.57499forward

Expression of CNT30496874

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSRTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRLRSFTATFFTLKPTLSPGRASCRASWCISTDFTSVVKPVGPKVTTIPGLMIPVSTRPTGTVPMPPILYTS*

Sequence

>CNT30496874
CAATCACGAGTACTAGCATTCAGCAAGCCGATAGGGGCACTATTCAGACTCAGGTAATTTAAGTTTTGCCAAATCCAAAATATTAAAACTGTATGTAAAC
GATAAACAGACTGATGGCACATTGCCAGCTGAGATAGATAGTTCACAACGTAACAGCAATGGCCTTGGACAAAACTTAAAAGAAATTAAAGCATCCAGAT
ATCCCAAAAGCAGATCCGGAATCAACCACCAGGCACATCATTTCTTCTTGGCCGCAGCCTTGGTGACCTTGGCACCAGTTGGGTCCTTCTTCTCCACACT
CTTGATGACTCCGACAGCAACAGTTTGCCTCATGTCACGGACAGCGAAACGACCAAGAGGAGGGTACTCGGAGAAGGTCTCCACCACCATGGGCTTGGTG
GGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCAGATCGTCTGTCTATCTTGGTAACCAGCTCAG
CAAACTTGACAGCGATGTGGGAGGTGTGGCAGTCCAGAACTGGGGCGTAGCCATTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAA
GCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAAGCCACGTACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAAGCCAACGTTG
TCACCAGGAAGGGCCTCCTGTAGAGCTTCGTGGTGCATCTCAACAGACTTCACCTCAGTGGTCAAACCAGTTGGCCCAAAGGTGACAACCATACCTGGCT
TGATGATACCAGTCTCAACACGACCAACAGGGACAGTTCCAATGCCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCCGAGGGTCT
CTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCGCCCTCAAAACCA
GAGATGGGCACGAAGGCAATCTTGTCAGGGTTGTAGCCAACCTTCTTGAGGTACGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACT
TGGGAGTGGTAGCATCCATCT