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Detailed information on CNT30287202


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 2e-109

BLAST vs NONCODE:
NONBNAT001751, E-value = 4e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Triticum aestivumOryza sativa66.3430.2989.52477forward
CNT30677701Triticum aestivumSetaria viridis56.6159.4288.45407forward
CNT30521302Triticum aestivumSetaria italica65.7932.1189.85473forward
CNT30639730Triticum aestivumNymphaea colorata36.4428.5186.64262forward
CNT30535563Triticum aestivumEucalyptus grandis65.0957.3586.75468forward
CNT30316757Triticum aestivumCorylus avellana60.3636.2387.79434forward
CNT30546678Triticum aestivumIpomoea triloba65.0934.883.97468forward
CNT30518292Triticum aestivumJuglans regia58.2891.2986.87419forward
CNT30371709Triticum aestivumArabidopsis thaliana47.5753.1186.84342forward
CNT30618435Triticum aestivumSesamum indicum45.7667.0183.28329forward
CNT30272277Triticum aestivumChenopodium quinoa40.3365.6185.86290forward
CNT3021062Triticum aestivumCitrullus lanatus65.9283.1683.97474forward
CNT30727588Triticum aestivumCorchorus capsularis65.9235.2786.08474forward
CNT30380230Triticum aestivumManihot esculenta61.3418.1886.62441forward
CNT30525464Triticum aestivumPhaseolus vulgaris47.8460.8883.43344forward
CNT30629687Triticum aestivumVigna unguiculata44.3716.1586.83319forward
CNT30194937Triticum aestivumPisum sativum48.8235.1484.62351forward
CNT30505987Triticum aestivumNicotiana attenuata33.9474.1685.66244forward
CNT30160120Triticum aestivumPistacia vera65.0937.6586.75468forward
CNT30637620Triticum aestivumCapsicum annuum33.812.6686.83243forward
CNT30224987Triticum aestivumHordeum vulgare38.1192.8891.61274forward
CNT30387246Triticum aestivumTriticum turgidum65.5140.9296.6471forward
CNT30564257Triticum aestivumActinidia chinensis59.5337.3584.58428forward
CNT30588666Triticum aestivumMusa acuminata42.763.1782.74307forward
CNT30541590Triticum aestivumBrassica napus59.3936.7287.59427forward
CNT30234068Triticum aestivumBrassica oleracea58.9789.8386.56424forward
CNT30173274Triticum aestivumTrifolium pratense59.5331.8285.51428forward
CNT30246955Triticum aestivumAvena sativa65.3726.6390.64470forward
CNT30665783Triticum aestivumTriticum dicoccoides59.5346.9892.99428forward
CNT30310177Triticum aestivumCamelina sativa66.3441.1286.58477forward
CNT3059230Triticum aestivumArabidopsis lyrata65.9239.4385.65474forward
CNT3079066Triticum aestivumBrassica juncea65.5139.4586.2471forward
CNT30614135Triticum aestivumArabis alpina65.5130.1985.77471forward
CNT30598511Triticum aestivumFraxinus excelsior66.3473.2784.7477forward
CNT30449234Triticum aestivumSaccharum spontaneum66.239.789.29476forward
CNT30132437Triticum aestivumLolium perenne66.3439.6889.52477forward
CNT3011290Triticum aestivumZea mays65.3734.1888.3470forward
CNT30232362Triticum aestivumAnanas comosus40.8951.4985.03294forward
CNT30127375Triticum aestivumCorymbia citriodora39.0850.3685.05281forward
CNT30680463Triticum aestivumTriticum urartu47.4350.0799.71341forward
CNT30721805Triticum aestivumTriticum spelta33.2416.5594.56239forward
CNT30350898Triticum aestivumEragrostis tef64.8141.8389.27466forward
CNT30480841Triticum aestivumArabidopsis halleri44.7851.8584.47322forward
CNT30368719Triticum aestivumSorghum bicolor64.6734.3489.25465forward
CNT30355521Triticum aestivumLactuca sativa59.9445.1883.99431forward
CNT30151899Triticum aestivumPrunus persica40.3326.2986.55290forward
CNT30427598Triticum aestivumPapaver somniferum64.1233.785.03461forward
CNT30706337Triticum aestivumPrunus avium65.0940.1487.39468forward
CNT30644842Triticum aestivumCannabis sativa33.6659.985.95242forward
CNT3052982Triticum aestivumAmborella trichopoda42.723.4783.06307forward
CNT3024873Triticum aestivumPopulus trichocarpa52.5767.0288.36378forward
CNT3037774Triticum aestivumCucumis melo57.8653.8286.06416forward
CNT30580076Triticum aestivumEchinochloa crusgalli53.8229.2589.66387forward
CNT30496874Triticum aestivumDigitaria exilis66.3442.5589.1477forward
CNT30116111Triticum aestivumOryza nivara46.7338.490.77336forward
CNT30594443Triticum aestivumEragrostis curvula65.0940.3190.17468forward
CNT30603820Triticum aestivumOryza punctata66.3444.2188.47477forward
CNT30176122Triticum aestivumVigna angularis63.2840.1983.08455forward
CNT30113122Triticum aestivumFicus carica50.944.184.97366forward
CNT30726405Triticum aestivumLupinus angustifolius64.6786.5985.59465forward
CNT3050294Triticum aestivumCucumis sativus55.3564.9383.67398forward

Expression of CNT30287202

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLQAADIKRLQISLKYKIATLSDEVSPTQPNDTMTTVISSSNTARHK*

Sequence

>CNT30287202
TATGCTACAGGCAGCAGATATAAAACGACTCCAAATATCACTCAAATATAAAATAGCAACTTTATCTGACGAAGTTTCACCAACACAACCGAACGATACT
ATGACCACAGTAATAAGCAGTTCGAACACTGCTCGACACAAATAACCAAAGCTTAACAAGTTCGCAAATCGGCTAACACGACTATCACCACCACCGTATA
CCGCCACCACCACCATAGATGTGGTAAAGAACCACCAACAACGCCACGTACCCACGCTTGAGATCCTTGACAGCCACATTCTTGACGTTGAAGCCGACAT
TATCACCAGGAAGCGCCTCCAGGAGAGACTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTCAGGCCAGTAGGACCAAAGGTGACAACCATGCCTGG
CTTGATGACTCCAGTCTCAACACGGCCCACTGGCACAGTTCCAATGCCGCCAATCTTGTACACGTCCTGAAGGGGAAGACGGAGGGGCTTGTCTGAGGGC
CTCTTGGGCTCATTGATCTGGTCCAGGGCCTCGAGAAGGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAACC
CAGAGATGGGAACAAAGGGAACCTTGTCAGGGTTGTAACCAACCTTCTTCAGGTATGAAGAGACTTCCTTGACAATTTCTTCATAACGGGCCTTCGAGTA
CTTGGGAGTGGTGGCATCC