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Detailed information on CNT30176122


BLAST search results

BLAST vs Swiss-Prot:
sp|P50378|EFTU_GONPE, E-value = 8e-15

BLAST vs NONCODE:
NONGMAT001702, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Vigna angularisOryza sativa76.5955.0583.39867forward
CNT30677701Vigna angularisSetaria viridis60.2599.5682.4682forward
CNT30521010Vigna angularisSetaria italica75.1878.0783.67851forward
CNT30639730Vigna angularisNymphaea colorata52.3964.5381.28593forward
CNT30535563Vigna angularisEucalyptus grandis68.8295.4783.44779forward
CNT30316757Vigna angularisCorylus avellana65.3761.7783.65740forward
CNT30546799Vigna angularisIpomoea triloba76.5970.682.93867forward
CNT30518094Vigna angularisJuglans regia76.4192.4181.62865forward
CNT30371709Vigna angularisArabidopsis thaliana56.6399.5382.53641forward
CNT30274113Vigna angularisChenopodium quinoa38.5269.8782.34436forward
CNT3021062Vigna angularisCitrullus lanatus44.9689.385.46509forward
CNT30727591Vigna angularisCorchorus capsularis72.9730.5986.08826forward
CNT30380230Vigna angularisManihot esculenta75.2735.1283.22852forward
CNT30525464Vigna angularisPhaseolus vulgaris49.5699.2996.61561forward
CNT30629544Vigna angularisVigna unguiculata34.5451.7296.16391forward
CNT30194937Vigna angularisPisum sativum7584.9883.75849forward
CNT30503993Vigna angularisNicotiana attenuata20.5884.7387.55233forward
CNT30712080Vigna angularisGlycine max30.4847.6590.14345forward
CNT30160120Vigna angularisPistacia vera74.1267.584.39839forward
CNT30637620Vigna angularisCapsicum annuum25.2714.985.66286forward
CNT30287202Vigna angularisTriticum aestivum40.1963.2883.08455forward
CNT30224723Vigna angularisHordeum vulgare28.5346.4184.21323forward
CNT30387246Vigna angularisTriticum turgidum75.1873.9480.02851forward
CNT30564257Vigna angularisActinidia chinensis45.1444.5984.54511forward
CNT3084119Vigna angularisVigna radiata45.2328.7698.05512forward
CNT30541591Vigna angularisBrassica napus7572.1983.39849forward
CNT30238010Vigna angularisBrassica oleracea7569.3682.57849forward
CNT30173274Vigna angularisTrifolium pratense72.9761.4184.38826forward
CNT30146334Vigna angularisMedicago truncatula56.1863.9883.02636forward
CNT30440878Vigna angularisAegilops tauschii23.3233.5985.98264forward
CNT30246955Vigna angularisAvena sativa75.2748.2781.81852forward
CNT30665783Vigna angularisTriticum dicoccoides70.5887.7184.73799forward
CNT30310418Vigna angularisCamelina sativa75.1873.3682.02851forward
CNT3059230Vigna angularisArabidopsis lyrata75.2770.8881.92852forward
CNT3077051Vigna angularisBrassica juncea75.2773.8383.33852forward
CNT30614135Vigna angularisArabis alpina64.3146.6782.97728forward
CNT30598511Vigna angularisFraxinus excelsior40.4670.3584.28458forward
CNT30449495Vigna angularisSaccharum spontaneum75.4470.1783.14854forward
CNT30132437Vigna angularisLolium perenne75.2770.8879.69852forward
CNT3011166Vigna angularisZea mays75.1860.1882.02851forward
CNT30608730Vigna angularisGossypium raimondii26.55087.33300forward
CNT30647369Vigna angularisRosa chinensis30.337.8685.13343forward
CNT30624959Vigna angularisDaucus carota29.0696.7685.11329forward
CNT30685098Vigna angularisTriticum urartu45.0534.6984.9510forward
CNT30350898Vigna angularisEragrostis tef75.1876.3982.84851forward
CNT30480841Vigna angularisArabidopsis halleri32.9560.0683.11373forward
CNT30368495Vigna angularisSorghum bicolor63.4370.4682.45718forward
CNT30355521Vigna angularisLactuca sativa43.0251.0585.63487forward
CNT30151899Vigna angularisPrunus persica29.0629.8383.59329forward
CNT30427756Vigna angularisPapaver somniferum75.1865.2682.37851forward
CNT30706337Vigna angularisPrunus avium72.9770.8481.96826forward
CNT3052982Vigna angularisAmborella trichopoda30.0425.9985340forward
CNT3024428Vigna angularisPopulus trichocarpa55.382.0481.31626forward
CNT3037774Vigna angularisCucumis melo41.5260.885.74470forward
CNT30148140Vigna angularisBrachypodium distachyon31.894.7482.78360forward
CNT30101053Vigna angularisOryza rufipogon28.5338.8787.93323forward
CNT30585575Vigna angularisEchinochloa crusgalli33.373.7886.47377forward
CNT30496874Vigna angularisDigitaria exilis75.277683.69852forward
CNT30116111Vigna angularisOryza nivara28.9837.4987.2328forward
CNT30594462Vigna angularisEragrostis curvula68.0266.1582.73770forward
CNT30603820Vigna angularisOryza punctata75.2778.9683.57852forward
CNT30113122Vigna angularisFicus carica37.0150.4884.01419forward
CNT30724026Vigna angularisLupinus angustifolius73.7657.9984.43835forward
CNT3050294Vigna angularisCucumis sativus39.9373.7485.62452forward

Expression of CNT30176122

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KCKQTTQQSGKTCCAYKNVIRGPHKITKTHKNT*

>peptide 2 (32 aa)
MTQEYKQETSIYCNHPLMNHPARFTSSFGQPW*

>peptide 3 (72 aa)
MSLTAKRPRGGYSEKVSTTIGLVGIIFTKPASPFFKNLGSFSSSLPERLSILVISSANLTAMWEVWQSRTGA*

>peptide 4 (54 aa)
MVHLNRLNFSCQSTWCKSHHHSRLDDTSFNTSDRHSSDSSNLVDILKRKPEGLV*

Sequence

>CNT30176122
AAAATGCAAACAAACAACACAGCAAAGCGGTAAAACTTGCTGCGCTTACAAAAATGTAATCAGGGGTCCTCACAAAATCACAAAAACACATAAAAACACA
TAATAATAATGATAAAAGAGCCGCCACCGTCGATCAAGAACCCAATTTTGGGAACAAAAGTTGGGAGATGATGGTGGAAACTTCAAACTAAGTACGAAAA
ACAATCTACCTAGCGATGACACAAGAGTACAAGCAAGAAACCAGCATTTATTGTAACCATCCCCTGATGAACCACCCAGCACGATTCACTTCTTCTTTTG
GGCAGCCTTGGTGACCTTGGCTCCAGTGGGGTCCTTCTTCTCAACGCTCTTGATGACTCCCACAGCCACAGTTTGACGCATGTCCCTCACAGCAAAACGT
CCAAGAGGTGGGTACTCAGAGAAAGTCTCCACCACCATTGGTTTGGTTGGAATCATCTTCACGAAACCAGCATCACCATTCTTCAAGAACTTAGGCTCCT
TCTCGAGCTCTTTGCCAGAACGCCTGTCAATCTTGGTCATAAGTTCTGCGAACTTGACAGCAATGTGGGAGGTGTGGCAATCCAGAACAGGGGCATAGCC
ATTTCCAATCTGACCAGGGTGGTGAAGTTAGCAGCCTCCTTAGCAGGATCATCCTTGGAGTTTGAAGCAACATAACCACGCTTGAGATCCTTAACAGCAA
CATTCTTCACATTGAACCCAACGTTGTCACCTGGGAGAGCTTCTGTGAGAGCTTCATGGTGCATCTCAACAGACTTAACTTCAGTTGTCAGTCCACTTGG
TGCAAAAGTCACCACCATTCCAGGCTTGATGACACCAGTTTCAACACGTCCGACAGGCACAGTTCCGATTCCTCCAATCTTGTAGACATCCTGAAGAGGA
AGCCTGAGGGGCTTGTCTGATGGCCTCTTGGGCTCAGTGATCTGGTCAAGTGCATCAAGCAAGGTAGGTCCCTTGTACCAGTCGAGGTTTGTGGACCTCT
CAATCATGTTGTCTCCCTCAAAACCAGAGATTGGAACAAAAGGAATCTTGTCTGGATTGTATCCCACTTTCTTCAAGTAGGAGGAGACTTCCTTCACAAT
TTCATCATACCTAGCCTTGGAGTACTTGGGTG