« Back to Trifolium pratense search


Detailed information on CNT30173274


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT007048, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Trifolium pratenseOryza sativa62.353.2185.32838forward
CNT30672814Trifolium pratenseSetaria viridis52.5766.3285.29707forward
CNT30521010Trifolium pratenseSetaria italica62.6877.3486.48843forward
CNT30639730Trifolium pratenseNymphaea colorata40.7459.6383.39548forward
CNT30535563Trifolium pratenseEucalyptus grandis55.6991.7984.78749forward
CNT30316757Trifolium pratenseCorylus avellana52.9459.4388.62712forward
CNT30546799Trifolium pratenseIpomoea triloba61.4167.2685.71826forward
CNT30518094Trifolium pratenseJuglans regia62.389.5383.53838forward
CNT30377782Trifolium pratenseArabidopsis thaliana51.368.3285.36690forward
CNT30618377Trifolium pratenseSesamum indicum19.1168.988.33257forward
CNT30274113Trifolium pratenseChenopodium quinoa34.87586.54468forward
CNT3021232Trifolium pratenseCitrullus lanatus59.4864.6284.25800forward
CNT30727590Trifolium pratenseCorchorus capsularis62.662.1487.65842forward
CNT30380230Trifolium pratenseManihot esculenta62.1634.4685.29836forward
CNT30525464Trifolium pratensePhaseolus vulgaris43.35103.1982.85583forward
CNT30629525Trifolium pratenseVigna unguiculata28.789.7790.67386forward
CNT30194937Trifolium pratensePisum sativum63.8785.9992.32859forward
CNT30712097Trifolium pratenseGlycine max31.1535.1287.35419forward
CNT30160120Trifolium pratensePistacia vera62.367.4286.75838forward
CNT30287202Trifolium pratenseTriticum aestivum31.8259.5385.51428forward
CNT30224132Trifolium pratenseHordeum vulgare31.7562.2485.48427forward
CNT30387246Trifolium pratenseTriticum turgidum62.4572.9882.38840forward
CNT30564256Trifolium pratenseActinidia chinensis45.6552.7584.69614forward
CNT3084148Trifolium pratenseVigna radiata39.7832.8486.92535forward
CNT30541587Trifolium pratenseBrassica napus61.3470.1586.42825forward
CNT30233993Trifolium pratenseBrassica oleracea61.3476.8286.42825forward
CNT30146334Trifolium pratenseMedicago truncatula50.0467.7193.61673forward
CNT30440472Trifolium pratenseAegilops tauschii23.3552.7786.31314forward
CNT30246955Trifolium pratenseAvena sativa62.4547.5986.9840forward
CNT30665783Trifolium pratenseTriticum dicoccoides62.4592.2183.57840forward
CNT30310177Trifolium pratenseCamelina sativa61.3471.1286.3825forward
CNT3059230Trifolium pratenseArabidopsis lyrata61.3468.6486.06825forward
CNT3075495Trifolium pratenseBrassica juncea61.3472.1886.18825forward
CNT30614135Trifolium pratenseArabis alpina52.2745.0686.34703forward
CNT30598511Trifolium pratenseFraxinus excelsior32.1266.3685.65432forward
CNT30449495Trifolium pratenseSaccharum spontaneum62.669.1985.39842forward
CNT30132437Trifolium pratenseLolium perenne62.4569.8882.26840forward
CNT3011166Trifolium pratenseZea mays62.359.2685.08838forward
CNT30608730Trifolium pratenseGossypium raimondii33.3174.6784.38448forward
CNT30647369Trifolium pratenseRosa chinensis31.0846.1485.65418forward
CNT30127375Trifolium pratenseCorymbia citriodora39.1194.2785.55526forward
CNT30685098Trifolium pratenseTriticum urartu35.8432.7987.34482forward
CNT30350898Trifolium pratenseEragrostis tef62.675.5885.99842forward
CNT30480841Trifolium pratenseArabidopsis halleri29.5263.9384.38397forward
CNT30368495Trifolium pratenseSorghum bicolor54.5772.0385.42734forward
CNT30355521Trifolium pratenseLactuca sativa5171.9187.46686forward
CNT30151899Trifolium pratensePrunus persica23.8729.186.29321forward
CNT30427756Trifolium pratensePapaver somniferum62.364.2686.87838forward
CNT30706337Trifolium pratensePrunus avium59.1868.2786.06796forward
CNT3024315Trifolium pratensePopulus trichocarpa50.1988.4783.26675forward
CNT3037774Trifolium pratenseCucumis melo33.8358.8688.13455forward
CNT30148140Trifolium pratenseBrachypodium distachyon28.2510088.16380forward
CNT30101006Trifolium pratenseOryza rufipogon29.6757.3386.97399forward
CNT30585575Trifolium pratenseEchinochloa crusgalli25.867.9186.17347forward
CNT30496833Trifolium pratenseDigitaria exilis62.6876.2287.07843forward
CNT30594443Trifolium pratenseEragrostis curvula62.0871.9285.99835forward
CNT30603788Trifolium pratenseOryza punctata62.671.4885.87842forward
CNT30176122Trifolium pratenseVigna angularis61.4172.9784.38826forward
CNT30113122Trifolium pratenseFicus carica36.5859.2884.55492forward
CNT30724026Trifolium pratenseLupinus angustifolius62.6858.5490.75843forward
CNT3050294Trifolium pratenseCucumis sativus38.4484.3484.33517forward

Expression of CNT30173274

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKLTIGSSTQVCKFSMIKPAKTLKIKLAI*

>peptide 2 (71 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGIILMIPASPFFKNLGSFSISLPDRLSILVTSSANFTAM*

>peptide 3 (33 aa)
MHSQPHNNHHHLSTDIQNQIKKSYRKRMDQNDL*

>peptide 4 (93 aa)
MMITWDVKLAASLAGSSLELDATKPRLRSLTATFLTLNPTLSPGRASVRASWCISTDLTSVVKPVGPKVTTIPGFTTPVSTRPTGTVPIPPIL*

Sequence

>CNT30173274
ATAAAGCTCTTGAAAGATATAACATAAAAACATTTTGACACAAACTCGGCAACAAATATAGATCTGAAACGTAGTCCCTGCAATTGTAAAACAAATGCAT
CTTTTCTAGGCAAAATTGCAGGCAACTCCACCTAACATGCATTCTCAGCCACACAACAATCATCATCATTTATCAACAGATATTCAGAACCAAATTAAAA
AATCATACAGAAAAAGGATGGACCAAAATGACTTATAATTTAATTTAAATGCAATCCTTCAGCAGCAAAATTAAGATAATAAACCTTAAAGCTGCCCATG
AAAATGGAGTTCTTAAGACACTGAATTAAAACCAAAAACTATACCATCTAAAACAAACAGAAATGAAATTGACCATCGGATCAAGTACCCAGGTCTGTAA
GTTTAGCATGATTAAACCGGCAAAAACTTTGAAGATAAAACTGGCGATATAAAGAACTAAGACTCTGAAAAAGAACAACATATGCAGCAACCATGGTGTG
AAATCATTTCTTCTTGGCAGCAGCTTTGGTGACCTTGGCTCCAGTTGGGTCCTTCTTCTCAACACCCTTGATGACTCCAACAGCAACAGTTTGTCTCATG
TCTCTCACAGCGAAACGACCAAGAGGAGGATATTCAGAGAAAGTCTCAACAACCATGGGCTTGGTGGGAATCATCTTAATGATACCAGCATCACCATTCT
TCAAAAACTTGGGCTCCTTCTCAATTTCCTTACCAGATCGTCTGTCAATCTTGGTGACAAGTTCAGCAAACTTCACAGCAATGTGAGAGGTGTGGCAATC
GAGCACTGGTGCATAACCGTTTCCAATCTGTCCAGGGTGGTTCATGATGATAACTTGGGATGTGAAGTTGGCAGCTTCCTTAGCAGGGTCATCCTTGGAG
TTGGATGCAACAAAACCACGCTTGAGATCCTTGACTGCAACATTCTTAACATTGAATCCGACATTGTCTCCTGGAAGAGCTTCAGTGAGAGCCTCGTGGT
GCATCTCAACAGACTTAACTTCAGTTGTCAAACCAGTGGGACCGAAAGTGACAACCATACCGGGCTTCACAACACCGGTTTCAACACGTCCGACTGGCAC
AGTTCCAATACCACCAATCTTGTAAACATCTTGCAATGGAAGCCTGAGTGGCTTGTCTGAGGGTCTCTTGGGCTCATTGATCTGGTCAAGAGCTTCAAGG
AGGGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGAACAAATGGAATTTTGTCAGGGTTGT
AACCGACCTTCTTCAAGTATGAAGAAACTTCCTTCACAATTTCAT