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Detailed information on CNT30518094


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Juglans regiaOryza sativa94.0255.8785.23880forward
CNT30677701Juglans regiaSetaria viridis71.6997.9687.33671forward
CNT30521187Juglans regiaSetaria italica89.6464.3986.05839forward
CNT30639730Juglans regiaNymphaea colorata60.7961.9282.78569forward
CNT30535563Juglans regiaEucalyptus grandis85.1597.6784.82797forward
CNT30316757Juglans regiaCorylus avellana79.3862.0287.89743forward
CNT30546799Juglans regiaIpomoea triloba92.3170.3684.72864forward
CNT30371709Juglans regiaArabidopsis thaliana65.2894.8885.27611forward
CNT30618435Juglans regiaSesamum indicum37.1870.8887.07348forward
CNT30274113Juglans regiaChenopodium quinoa46.7970.1984.93438forward
CNT3021028Juglans regiaCitrullus lanatus89.9667.7983.49842forward
CNT30727590Juglans regiaCorchorus capsularis91.2463.0387.24854forward
CNT30380230Juglans regiaManihot esculenta93.3836.0385.7874forward
CNT30525464Juglans regiaPhaseolus vulgaris61.97102.6582.07580forward
CNT30629525Juglans regiaVigna unguiculata41.359086.82387forward
CNT30194937Juglans regiaPisum sativum94.1288.1982.63881forward
CNT30712097Juglans regiaGlycine max45.7335.8882.71428forward
CNT30160120Juglans regiaPistacia vera94.0270.887.73880forward
CNT30224132Juglans regiaHordeum vulgare44.7661.0885.2419forward
CNT30387246Juglans regiaTriticum turgidum58.9747.9687.14552forward
CNT30564256Juglans regiaActinidia chinensis65.2852.4988.05611forward
CNT3084148Juglans regiaVigna radiata58.8733.8285.3551forward
CNT30541590Juglans regiaBrassica napus92.3174.2983.45864forward
CNT30233993Juglans regiaBrassica oleracea92.3180.4584.49864forward
CNT30173274Juglans regiaTrifolium pratense89.5362.383.53838forward
CNT30146334Juglans regiaMedicago truncatula66.3562.4783.74621forward
CNT30440472Juglans regiaAegilops tauschii35.2655.4687.88330forward
CNT30246955Juglans regiaAvena sativa86.1145.6785.36806forward
CNT30665783Juglans regiaTriticum dicoccoides74.8976.9584.31701forward
CNT30310418Juglans regiaCamelina sativa92.3174.4885.07864forward
CNT3059230Juglans regiaArabidopsis lyrata92.3171.8884.49864forward
CNT3074201Juglans regiaBrassica juncea89.9692.0284.56842forward
CNT30614135Juglans regiaArabis alpina79.1747.585.29741forward
CNT30449495Juglans regiaSaccharum spontaneum88.3567.9585.37827forward
CNT30132437Juglans regiaLolium perenne93.5972.8881.51876forward
CNT3011166Juglans regiaZea mays91.8860.8285.12860forward
CNT30608730Juglans regiaGossypium raimondii47.8674.6785.94448forward
CNT30228831Juglans regiaAnanas comosus22.8668.1589.25214forward
CNT30647369Juglans regiaRosa chinensis45.6247.1384.31427forward
CNT30127375Juglans regiaCorymbia citriodora55.4593.0186.13519forward
CNT30624959Juglans regiaDaucus carota34.8395.8884.36326forward
CNT30685098Juglans regiaTriticum urartu51.7132.9388.84484forward
CNT30350898Juglans regiaEragrostis tef86.1172.3585.73806forward
CNT30480841Juglans regiaArabidopsis halleri42.4163.9385.64397forward
CNT30368770Juglans regiaSorghum bicolor72.9795.3986.38683forward
CNT30355521Juglans regiaLactuca sativa76.575.0584.92716forward
CNT30151899Juglans regiaPrunus persica35.4730.186.45332forward
CNT30427756Juglans regiaPapaver somniferum91.1365.4183.94853forward
CNT30706337Juglans regiaPrunus avium89.4271.7885.78837forward
CNT3052982Juglans regiaAmborella trichopoda36.5426.1585.38342forward
CNT3024315Juglans regiaPopulus trichocarpa71.988.284.99673forward
CNT3037774Juglans regiaCucumis melo48.2958.4787.61452forward
CNT30148140Juglans regiaBrachypodium distachyon33.8783.4288.01317forward
CNT30100761Juglans regiaOryza rufipogon36.1158.9988.17338forward
CNT30496874Juglans regiaDigitaria exilis86.1171.986.48806forward
CNT30116111Juglans regiaOryza nivara33.1235.4388.06310forward
CNT30594443Juglans regiaEragrostis curvula89.171.8385.49834forward
CNT30603788Juglans regiaOryza punctata93.5974.3685.5876forward
CNT30176122Juglans regiaVigna angularis92.4176.4181.39865forward
CNT30113122Juglans regiaFicus carica51.558.0785.48482forward
CNT30724026Juglans regiaLupinus angustifolius90.2858.6884.85845forward
CNT3050294Juglans regiaCucumis sativus55.9885.4884.16524forward

Expression of CNT30518094

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAASLAGSSLELEATKPRFRSFTATFFTLKPTLSPGRASWRASWCISTDLTSVVSPVGPKVTTIPGLMTPVSTRPTGTVPMPPIL*

>peptide 2 (62 aa)
ITNMIAGMICQNLRNLHDSLLLSSRLGDLRTTWILLLNTLYDTNSHGLAHVPNGKTAERWIS*

>peptide 3 (54 aa)
MVHLHRFNFSRQSSGAKGHNHTRLDDTSLHTSNWDGSNATNLVDVLEWQTEGLV*

Sequence

>CNT30518094
GCATTACCAATATGATAGCAGGCATGATATGCCAAAATCTGAGGAACCTGCACGATTCACTTCTTCTTAGCAGCAGACTTGGTGACCTTCGCACCACTTG
GATCCTTCTTCTCAACACTCTTTATGACACCAACAGCCACGGTCTGGCGCATGTCCCTAACGGCAAAACGGCCGAGAGGTGGATAAGCTGAAAAAGTCTC
GACAACCATTGGCTTGGTGGGAATCATCTTCACCATCCCTGCATCTCCATTCTTCAAAAATTTTGGCTCTTTCTCGAGCTCCTTACCAGATCGCCTGTCA
ATCTTAGTCAACAGCTCAGCAAACTTAACTGCAATGTGGCAAGTGTGGCAGTCAAGCACTGGAGCATAACCATTGCCGATCTGACCAGGGTGATTCATGA
TGATGACCTGGGAGGTGAAGTTAGCTGCCTCCTTGGCAGGATCATCCTTGGAGTTGGAAGCAACAAAACCACGCTTCAGATCCTTCACGGCTACGTTCTT
CACGTTGAAGCCAACATTGTCACCAGGAAGGGCCTCCTGGAGAGCTTCATGGTGCATCTCCACAGATTTAACTTCAGTCGTCAGTCCAGTGGGGCCAAAG
GTCACAACCATACCAGGCTTGATGACACCAGTCTCCACACGTCCAACTGGGACGGTTCCAATGCCACCAATCTTGTAGACGTCCTGGAGTGGCAGACGGA
GGGGCTTGTCTGAGGGCCTCTTGGGCTCCTGGATCAAGTCAAGAGCCTCAAGGAGGGTGGGGCCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCAT
GTTGTCGCCCTCAAAACCAGAGATTGGGACGAAGGGGATCTTGTCAGGGTTGTACCCAACCTTCTTTAAATAGGATGAAACTTCCTTAACGATTTCATCG
TACCTTGCCTTGGAATATTTAGGGGTTGTGGCATCC