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Detailed information on CNT30116111


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONCQUT008675, E-value = 2e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Oryza nivaraSetaria viridis36.9158.5195.36323forward
CNT30521308Oryza nivaraSetaria italica38.6330.2692.31338forward
CNT30535563Oryza nivaraEucalyptus grandis38.0640.8185.59333forward
CNT30316757Oryza nivaraCorylus avellana36.9126.9686.38323forward
CNT30546678Oryza nivaraIpomoea triloba36.2323.5788.33317forward
CNT30518094Oryza nivaraJuglans regia35.4333.1288.06310forward
CNT3021028Oryza nivaraCitrullus lanatus31.0921.986.76272forward
CNT30727588Oryza nivaraCorchorus capsularis38.42587.5336forward
CNT30525464Oryza nivaraPhaseolus vulgaris25.7139.8287.56225forward
CNT30629687Oryza nivaraVigna unguiculata35.7715.8587.22313forward
CNT30160120Oryza nivaraPistacia vera37.4926.3989.02328forward
CNT30287202Oryza nivaraTriticum aestivum38.446.7390.77336forward
CNT30387246Oryza nivaraTriticum turgidum38.429.1991.07336forward
CNT30540416Oryza nivaraBrassica napus36.9187.7787.62323forward
CNT30234210Oryza nivaraBrassica oleracea36.2328.7987.7317forward
CNT30146188Oryza nivaraMedicago truncatula38.1742.5585.33334forward
CNT30440878Oryza nivaraAegilops tauschii30.1733.5992.8264forward
CNT30310177Oryza nivaraCamelina sativa37.4928.2888.11328forward
CNT3059230Oryza nivaraArabidopsis lyrata38.1727.7987.43334forward
CNT3077042Oryza nivaraBrassica juncea37.8327.4988.52331forward
CNT30598511Oryza nivaraFraxinus excelsior37.7150.6986.36330forward
CNT30449234Oryza nivaraSaccharum spontaneum38.2927.9490.45335forward
CNT30132437Oryza nivaraLolium perenne35.5425.8790.68311forward
CNT3011290Oryza nivaraZea mays38.424.4490.18336forward
CNT30685098Oryza nivaraTriticum urartu38.6322.9992.01338forward
CNT30355521Oryza nivaraLactuca sativa34.1731.3486.62299forward
CNT30424894Oryza nivaraPapaver somniferum38.1744.8985.63334forward
CNT30706337Oryza nivaraPrunus avium36.5727.4489.38320forward
CNT3024873Oryza nivaraPopulus trichocarpa36.6956.9186.92321forward
CNT3037774Oryza nivaraCucumis melo31.7735.9687.77278forward
CNT30147611Oryza nivaraBrachypodium distachyon21.8331.8394.24191forward
CNT30580076Oryza nivaraEchinochloa crusgalli38.7425.6291.15339forward
CNT30496962Oryza nivaraDigitaria exilis38.0629.6391.29333forward
CNT30594443Oryza nivaraEragrostis curvula38.7429.292.63339forward
CNT30176122Oryza nivaraVigna angularis37.4928.9887.2328forward
CNT30724026Oryza nivaraLupinus angustifolius34.1720.7687.63299forward
CNT3050518Oryza nivaraCucumis sativus28.3439.9486.69248forward

Expression of CNT30116111

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LGPKVTTIPGLRTPVSTRPTGTVPIPPILYTS*

>peptide 2 (44 aa)
MVIPLSRSALSLSSTHAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 3 (40 aa)
GTKGHHHTRLEDSSLNTTHRHGANTTDLVHVLKGKTQGLV*

Sequence

>CNT30116111
CTGGGACCAAAGGTCACCACCATACCAGGCTTGAGGACTCCAGTCTCAACACGACCCACAGGCACGGTGCCAATACCACCGATCTTGTACACGTCCTGAA
GGGGAAGACGCAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAAGGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGA
CCTCTCAATCATGTTGTCACCCTCAAACCCAGAGATGGGAACGAAGGGAATCTTGTCAGGATTGTAGCCAACCTTCTTCAGGTAGGATGAGACTTCCTTC
ACGATTTCATCATAACGGGCCTTGGAGTACTTGGGAGTGCAGCAGATCATCTGCTTCACTCCAAGAGTGAAAGCAAGAAGAGCGTGCTCACGGGTCTGGC
CATCCTTGGAGATACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATGAGCACGGCACAGTCAGCCTGGGAGGTACCCGTGATCATGTTCTTGATGAA
GTCACGGTGACCAGGGGCATCGATGACCGTGCAGTAGTACTTGGTGGTACCCGTGATCATGTTCTTGATGAAGTCACGGTGACCAGGGGCATCGATGACC
GTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCGATATCGATGGTGATACCTCTCTCACGCTCGGCCTTGAGCTTGTCAAGCACCCACGCGTACT
TGAAGGACCTCTTGTTCATCTCAGCGGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCGATACCTCCAAGCTTGTAGATCAGATGGCCCGTGGTGGT
CGACTTGCCGGAGTCGACGTGGCCAATGACCACGATGTTGATGTGCGTCTTCTCCTTACCCATGGTTGAATAAGG