« Back to Triticum aestivum search


Detailed information on CNT30304911


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 8e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Triticum aestivumSetaria viridis47.49101.0782.75284forward
CNT30523536Triticum aestivumSetaria italica47.9950.884.67287forward
CNT30536082Triticum aestivumEucalyptus grandis37.4637.8481.25224forward
CNT30316008Triticum aestivumCorylus avellana41.4737.9282.66248forward
CNT30376379Triticum aestivumArabidopsis thaliana41.9733.7482.47251forward
CNT30616460Triticum aestivumSesamum indicum65.2227.1879.49390forward
CNT30269263Triticum aestivumChenopodium quinoa73.0857.3581.01437forward
CNT3021339Triticum aestivumCitrullus lanatus44.9842.4380.3269forward
CNT30524942Triticum aestivumPhaseolus vulgaris23.9121.3183.92143forward
CNT30628702Triticum aestivumVigna unguiculata27.7624.2383.13166forward
CNT30710529Triticum aestivumGlycine max47.4950.3580.63284forward
CNT3042412Triticum aestivumPrunus dulcis37.9630.6382.82227forward
CNT3091337Triticum aestivumSolanum tuberosum56.6941.5479.65339forward
CNT30193210Triticum aestivumSecale cereale35.7910096.73214forward
CNT30234460Triticum aestivumBrassica oleracea44.9838.2682.53269forward
CNT30554580Triticum aestivumOryza glaberrima71.7463.0986.25429forward
CNT30145737Triticum aestivumMedicago truncatula43.4842.2181.15260forward
CNT30256659Triticum aestivumAvena sativa84.6270.7788.14506forward
CNT30311656Triticum aestivumCamelina sativa33.4436.0483200forward
CNT3067990Triticum aestivumLeersia perrieri62.5498.1683.69374forward
CNT30205386Triticum aestivumHelianthus annuus52.5143.9280.25314forward
CNT30713436Triticum aestivumMalus domestica golden29.9355.5983.8179forward
CNT30688162Triticum aestivumTriticum urartu77.4268.994.82463forward
CNT30341750Triticum aestivumEragrostis tef52.0157.3889.39311forward
CNT30366537Triticum aestivumSorghum bicolor75.0851.4984.19449forward
CNT30596736Triticum aestivumOryza meridionalis76.0960.2686.37455forward
CNT30354603Triticum aestivumLactuca sativa51.5145.4981.17308forward
CNT30370935Triticum aestivumOryza glumipatula77.2647.7386.15462forward
CNT30154791Triticum aestivumPrunus persica37.9629.2182.82227forward
CNT30574166Triticum aestivumVitis vinifera40.6456.6480.66243forward
CNT30705859Triticum aestivumPrunus avium36.9629.5981221forward
CNT30109704Triticum aestivumOryza longistaminata39.4642.4586.02236forward
CNT3035176Triticum aestivumCucumis melo22.4124.3684.33134forward
CNT30330871Triticum aestivumDioscorea rotundata41.9734.7281.27251forward
CNT30103004Triticum aestivumOryza rufipogon79.647.7483.4476forward
CNT30577473Triticum aestivumOryza barthii52.1757.2586.54312forward
CNT30584443Triticum aestivumEchinochloa crusgalli68.5659.1685.61410forward
CNT30497905Triticum aestivumDigitaria exilis76.4250.6183.59457forward
CNT30558075Triticum aestivumPanicum hallii76.4257.9287.09457forward
CNT30551544Triticum aestivumOryza brachyantha50.3343.3185.38301forward
CNT30335475Triticum aestivumCynara cardunculus51.5123.7184.09308forward
CNT3049544Triticum aestivumCucumis sativus63.0447.0780.11377forward

Expression of CNT30304911

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MTGMSGCMRATWGCMRVMSGCMRAMLGCTREKWGCMMATLGCKMATSGCMQEMSDCMLARSDYKPVMLDYSSEMWGCSLVMLGCSSEMWGCS*

>peptide 2 (43 aa)
CSSEKSDCTGSSSLGCLENKHVKDCTWPKKDCSSVKWGCSSVK*

Sequence

>CNT30304911
CTGTAGTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTGGGGCTGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCT
GTATGACGGGGATGTCGGGCTGTATGAGGGCGACGTGGGGCTGTATGAGGGTGATGTCGGGCTGTATGAGGGCGATGTTGGGCTGTACGAGGGAGAAGTG
GGGCTGTATGATGGCGACGTTGGGCTGTAAGATGGCGACGTCGGGCTGTATGCAGGAGATGTCGGACTGTATGCTGGCGAGGTCGGACTATAAACCGGTG
ATGTTGGACTATAGCTCGGAGATGTGGGGCTGTAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCT
GGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTAACCACCTCCAGAGG