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Detailed information on CNT30442780


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Aegilops tauschiiSetaria viridis34.9398.5881.59277forward
CNT30523536Aegilops tauschiiSetaria italica54.2276.1181.4430forward
CNT30535924Aegilops tauschiiEucalyptus grandis22.5761.0981.56179forward
CNT30269270Aegilops tauschiiChenopodium quinoa52.7179.6280.62418forward
CNT3021339Aegilops tauschiiCitrullus lanatus47.2959.1579.47375forward
CNT30403782Aegilops tauschiiBeta vulgaris14.6327.7585.34116forward
CNT30524932Aegilops tauschiiPhaseolus vulgaris16.928.5784.33134forward
CNT30628902Aegilops tauschiiVigna unguiculata16.5229.5786.26131forward
CNT30710435Aegilops tauschiiGlycine max32.6644.8980.69259forward
CNT30193210Aegilops tauschiiSecale cereale26.3697.6695.69209forward
CNT30400271Aegilops tauschiiTriticum turgidum62.4210091.52495forward
CNT3088002Aegilops tauschiiVigna radiata16.5224.7285.5131forward
CNT30234460Aegilops tauschiiBrassica oleracea44.0149.6480.23349forward
CNT30508722Aegilops tauschiiSolanum lycopersicum30.2646.7880.83240forward
CNT30554721Aegilops tauschiiOryza glaberrima91.4277.5484725forward
CNT30145737Aegilops tauschiiMedicago truncatula39.4750.8180.51313forward
CNT30256659Aegilops tauschiiAvena sativa64.1971.1986.84509forward
CNT30668234Aegilops tauschiiTriticum dicoccoides57.577.5597.59456forward
CNT30312316Aegilops tauschiiCamelina sativa18.4139.0482.88146forward
CNT3076593Aegilops tauschiiBrassica juncea41.3660.0780.18328forward
CNT30263459Aegilops tauschiiBrassica rapa35.6952.3180.92283forward
CNT3016767Aegilops tauschiiZea mays58.6461.5183.44465forward
CNT30605857Aegilops tauschiiGossypium raimondii47.4146.3679.26376forward
CNT3067979Aegilops tauschiiLeersia perrieri44.7798.6183.94355forward
CNT30205103Aegilops tauschiiHelianthus annuus36.0740.481.12286forward
CNT30713436Aegilops tauschiiMalus domestica golden18.0344.4182.52143forward
CNT30688162Aegilops tauschiiTriticum urartu84.99100.396.14674forward
CNT30341749Aegilops tauschiiEragrostis tef50.5790.1186.53401forward
CNT30366857Aegilops tauschiiSorghum bicolor57.6346.5483.59457forward
CNT30370935Aegilops tauschiiOryza glumipatula68.656.282.9544forward
CNT30408809Aegilops tauschiiPapaver somniferum54.485078.7432forward
CNT30574226Aegilops tauschiiVitis vinifera25.0939.8881.41199forward
CNT30109704Aegilops tauschiiOryza longistaminata30.0142.8184.45238forward
CNT30330867Aegilops tauschiiDioscorea rotundata22.724.983.89180forward
CNT30150463Aegilops tauschiiBrachypodium distachyon10090.2288.02793forward
CNT30103004Aegilops tauschiiOryza rufipogon97.177.2382.08770forward
CNT30497833Aegilops tauschiiDigitaria exilis59.7753.7483.54474forward
CNT30558075Aegilops tauschiiPanicum hallii62.4262.7482.22495forward
CNT30551544Aegilops tauschiiOryza brachyantha90.79103.680.97720forward

Expression of CNT30442780

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MWGCSSGMLASMMDWSESMMDWSGCRKESQAYMMERWGCSWAMQGCMMEKWDCNHVLALG*

>peptide 2 (43 aa)
CSSEKSDCTGSSSLGCLENKHVKDCTWPKKGCSSVKWGCSSGK*

>peptide 3 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHL*

>peptide 4 (36 aa)
MMATSDYKPVMLDYSSAMWGYSLVMLGCSSGMWGCS*

Sequence

>CNT30442780
CTGTAGTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGGTTGTAGC
TCGGTGAAGTGGGGCTGTAGTTCGGGGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAGCCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCT
GTATGAGGGCGAGGTAGGGCTGTATGAGGGTGACGTGGGGCTGTATGAGGGCGACGTGGGGCTGTATGAGGGTGATGTCGCGGGCTGTATGAGGGCGATG
TCGGGCTGTATGAGGGAGAAGTAGGGCTGTATGATGGCGACGTCGGACTATAAACCGGTGATGTTGGACTATAGCTCGGCGATGTGGGGCTATAGCTTGG
TGATGTTGGGCTGTAGCTCGGGGATGTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCTCGGGGATGTTGGCGAGTATGATGGACTGGTCGGAGAGTAT
GATGGACTGGTCGGGCTGTAGGAAGGAGAGCCAGGCGTATATGATGGAGAGGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGAC
TGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTAACCACCTCCAGAGGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCAT
GCCCCCAACATATGGTGAGAACTGAGCATCTGTAATTGGGGAAGCCCTGAAATTTGGACTCAACATTGGTGACATCATTCCTCCATCACGGTA