Detailed information on CNT30400472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 6e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Triticum turgidumSetaria italica25.3844.7886.56253forward
CNT30535924Triticum turgidumEucalyptus grandis17.5559.7383.43175forward
CNT30316008Triticum turgidumCorylus avellana24.5737.4682.04245forward
CNT3021339Triticum turgidumCitrullus lanatus24.0737.8580.83240forward
CNT30727660Triticum turgidumCorchorus capsularis25.7846.9880.54257forward
CNT30628902Triticum turgidumVigna unguiculata13.1429.5785.5131forward
CNT30308418Triticum turgidumTriticum aestivum71.3198.6194.94711forward
CNT3088002Triticum turgidumVigna radiata13.1424.7284.73131forward
CNT30554580Triticum turgidumOryza glaberrima43.0363.0985.08429forward
CNT30256659Triticum turgidumAvena sativa48.3567.4187.76482forward
CNT30468540Triticum turgidumSaccharum spontaneum46.4453.4685.1463forward
CNT30141877Triticum turgidumLolium perenne44.3398.6689.59442forward
CNT30205386Triticum turgidumHelianthus annuus3346.0181.16329forward
CNT30687691Triticum turgidumTriticum urartu77.2386.2394.29770forward
CNT30350937Triticum turgidumEragrostis tef46.4483.7383.59463forward
CNT30596736Triticum turgidumOryza meridionalis45.3459.8785.62452forward
CNT30370935Triticum turgidumOryza glumipatula46.0447.4284.75459forward
CNT30408809Triticum turgidumPapaver somniferum33.338.4379.52332forward
CNT30330867Triticum turgidumDioscorea rotundata29.0940.1181.72290forward
CNT30149777Triticum turgidumBrachypodium distachyon46.5450.3889.44464forward
CNT30335475Triticum turgidumCynara cardunculus33.325.5683.43332forward

Expression of CNT30400472

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHL*

>peptide 2 (77 aa)
MMATLGCKMATSGCMQEMLGCMLARSDYKPVMLDYSSAMWGYSLVMLGCSSEMWGCSWAMQGCMMEKWDCNHVLALG*

>peptide 3 (38 aa)
SDCTGSSSLDCLENKHVKDCTWPKKDCSSVKWGCSSVK*

Sequence

>CNT30400472
GTCTGACTGTACGGGCTCATCATCCTTGGACTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTCGGTGAAGTGGGGC
TGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGGGCGAGGT
AGGGCTGTATGAGGGGGATGTCGGGCTGTATGAGGGTGACGTGGGGCTGTATGAGGGTGATGTCGGGCTGTACGAGGGAGAAGTAGGGCTGTATGATGGC
GACGTTGGGCTGTAAGATGGCGACGTCGGGCTGTATGCAGGAGATGTTGGGCTGTATGCTGGCGAGGTCGGACTATAAACCGGTGATGTTGGACTATAGC
TCGGCGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACT
GTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTAACCACCTCCAGAGGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCATG
CCCCCAACATATGGTGAGAACTGAGCATCTGTAATTGGGGAAGCCCTGAAATTTGGACTCAGCATTGGTGACATCATTCCTCCATCACGGTACGGTGTCG
CGGACATGGGTGAACGCGCTGGTGTCATGCCATAGTCCAGACCTTCAACATAGCTTGGGAGTTGAAGCTCAATCGCCTGCTGCAGCATCTGGTCATTCAG
ATACAATCCACAGCCTCCTGTACCAATAGGAGCAAGCTGGCCAAGCATAATGTTCTCAGTCACACCTCTTAGGTAATCAGATTCCGCATATACAGCAGCA
TCAAGCAAGATATCCACTGTTTCTTCAAAAGAACATCTCATGAGGGGCCCTGTGTCATTACGATTTATACCATGCCTAGTAATAGCCATCAGGTGAC