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Detailed information on CNT30584443


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403782Echinochloa crusgalliBeta vulgaris26.4143.7882.51183forward
CNT30195835Echinochloa crusgalliPisum sativum21.0757.4882.19146forward
CNT30489068Echinochloa crusgalliOlea europaea35.0649.1979.84243forward
CNT30506120Echinochloa crusgalliNicotiana attenuata34.7841.282.57241forward
CNT30304911Echinochloa crusgalliTriticum aestivum27.9932.4484.54194forward
CNT30385584Echinochloa crusgalliTriticum turgidum34.0548.9683.47236forward
CNT30443444Echinochloa crusgalliAegilops tauschii32.7624.3884.58227forward
CNT30256659Echinochloa crusgalliAvena sativa48.0546.5782.58333forward
CNT30263848Echinochloa crusgalliBrassica rapa27.9945.8681.96194forward
CNT30141877Echinochloa crusgalliLolium perenne27.1341.9687.23188forward
CNT30680596Echinochloa crusgalliTriticum urartu32.7650.4485.9227forward
CNT30620243Echinochloa crusgalliCajanus cajan30.5963.8683.02212forward
CNT30642143Echinochloa crusgalliCannabis sativa27.9947.280.41194forward
CNT30121049Echinochloa crusgalliCitrus clementina26.717.184.32185forward

Expression of CNT30584443

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKVKLGCMKAMLGYKMVMLGYKMAMWGCMQEM*

>peptide 2 (31 aa)
MMDCIPLKMESSHLVMEMVRMPCAQHMVRTKH

Sequence

>CNT30584443
GAGTATGCATGTGAAGGACTGTATTTGGCTGATGAAGGATTATAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTCGGGCTGTAACTTGGTGATGTTG
GGCTGTATCCAGGCGAGGTAGGGCTGTATGCAGGGGAGGTAGGGCTGTATGAGGGGGAGGTAGGGCTGTATGAGGGGGATGTAGGGCTGTATGAGGGGGA
TGTAGGGCTGTATGAAGGTGAAGTTGGGCTGTATGAAGGCGATGTTGGGCTATAAGATGGTGATGTTGGGCTATAAGATGGCGATGTGGGGCTGTATGCA
GGAGATGTAGGGCTATATGCTGGCGAGGTGGGGCTGTAGCTTGGTGACGTAGGACTGTAGCTCGGAGATGTAGGGCTGTAGCTAGGAGATGTAGGGCTGT
AACTCGGAGATGTGGGCGAGTATGATGGACTGGTGGGGGAGTATGTTGGACTTGTTGGCGAGTAATTCGGGCTTGTAGGACTGTAAGTGGGAGAGCCAGG
TGTATATGATGGTGAGGTGGGGCTATAGCTTGGTGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACTGGAGATGAT
GGACTGTATCCCCCTGAAGATGGAGAGTAGCCACCTGGTGATGGAAATGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCT