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Detailed information on CNT30408809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Papaver somniferumNymphaea colorata31.9436.4683.7276forward
CNT30315800Papaver somniferumCorylus avellana44.4483.4881.77384forward
CNT30516792Papaver somniferumJuglans regia92.0189.3378.87795forward
CNT30376379Papaver somniferumArabidopsis thaliana55.0963.9880.46476forward
CNT30616482Papaver somniferumSesamum indicum84.724879.1732forward
CNT30269263Papaver somniferumChenopodium quinoa66.975.8580.97578forward
CNT3021339Papaver somniferumCitrullus lanatus65.3989.1281.24565forward
CNT30727661Papaver somniferumCorchorus capsularis61.3484.6679.06530forward
CNT30378927Papaver somniferumManihot esculenta67.5994.3579.11584forward
CNT30403468Papaver somniferumBeta vulgaris32.8736.6983.8284forward
CNT30524942Papaver somniferumPhaseolus vulgaris41.253.0682.02356forward
CNT30628702Papaver somniferumVigna unguiculata46.5358.6979.6402forward
CNT30195835Papaver somniferumPisum sativum25.2385.8381.19218forward
CNT30489027Papaver somniferumOlea europaea26.6266.4785.22230forward
CNT30506120Papaver somniferumNicotiana attenuata57.5284.9681.29497forward
CNT30708216Papaver somniferumGlycine max42.7166.0182.38369forward
CNT3042435Papaver somniferumPrunus dulcis70.0287.4378.68605forward
CNT3091337Papaver somniferumSolanum tuberosum37.3839.5882.35323forward
CNT30308418Papaver somniferumTriticum aestivum34.9541.8979.8302forward
CNT30400472Papaver somniferumTriticum turgidum38.4333.379.52332forward
CNT30559890Papaver somniferumActinidia chinensis69.3387.780.63599forward
CNT3087851Papaver somniferumVigna radiata42.5940.2681.79368forward
CNT30234460Papaver somniferumBrassica oleracea60.1973.9779.62520forward
CNT30508904Papaver somniferumSolanum lycopersicum45.4963.5981.17393forward
CNT30554721Papaver somniferumOryza glaberrima54.7550.5978.44473forward
CNT30145737Papaver somniferumMedicago truncatula32.8746.180.28284forward
CNT30442780Papaver somniferumAegilops tauschii5054.4878.7432forward
CNT30256659Papaver somniferumAvena sativa28.3634.2781.22245forward
CNT3076593Papaver somniferumBrassica juncea45.8372.5381.57396forward
CNT30263540Papaver somniferumBrassica rapa41.255.1980.9356forward
CNT30468540Papaver somniferumSaccharum spontaneum48.9648.8578.96423forward
CNT30141877Papaver somniferumLolium perenne27.3152.6881.36236forward
CNT30648676Papaver somniferumRosa chinensis49.0756.9179.72424forward
CNT30205386Papaver somniferumHelianthus annuus41.3249.9381.23357forward
CNT30625810Papaver somniferumDaucus carota44.3356.4983.29383forward
CNT30688162Papaver somniferumTriticum urartu49.7763.9978.6430forward
CNT30350932Papaver somniferumEragrostis tef42.2581.6678.9365forward
CNT30476941Papaver somniferumArabidopsis halleri46.7650.4480.45404forward
CNT30366857Papaver somniferumSorghum bicolor54.0547.5678.8467forward
CNT30354623Papaver somniferumLactuca sativa38.5451.9581.08333forward
CNT30154777Papaver somniferumPrunus persica76.0482.1280.52657forward
CNT30573855Papaver somniferumVitis vinifera68.1797.8483.19589forward
CNT30705859Papaver somniferumPrunus avium67.7178.3179.15585forward
CNT30642028Papaver somniferumCannabis sativa54.6392.1980.3472forward
CNT3028162Papaver somniferumTheobroma cacao47.1172.5580.34407forward
CNT3051605Papaver somniferumAmborella trichopoda70.3791.778.45608forward
CNT30121168Papaver somniferumCitrus clementina61.6950.1978.42533forward
CNT3035176Papaver somniferumCucumis melo46.0672.3680.4398forward
CNT30330867Papaver somniferumDioscorea rotundata38.7746.3383.88335forward
CNT30149986Papaver somniferumBrachypodium distachyon50.9349.0578.86440forward
CNT30498009Papaver somniferumDigitaria exilis50.9344.9479.32440forward
CNT30176441Papaver somniferumVigna angularis49.1970.2580425forward
CNT30558075Papaver somniferumPanicum hallii28.731.4381.05248forward
CNT30335475Papaver somniferumCynara cardunculus39.1226.0281.95338forward
CNT3049385Papaver somniferumCucumis sativus53.1257.9580.61459forward

Expression of CNT30408809

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MITRRCGTVAGRCGTVARRCRTVPRRRRTVCRRGGAV*

>peptide 2 (57 aa)
MWDCSWEMWDCSSEMSDCTQETSDCMQERWGCMMARWGCRMARWGCRTARWGYMMVT*

Sequence

>CNT30408809
GTATGACTGTATGGGCTAGACGGTGATATTCTTGGACTGCTTGGAGAGTATGCCAAAGATGGACTGTACTTTGCCGATGAAGGATGATAACTAGGAGATG
TGGGACTGTAGCTGGGAGATGTGGGACTGTAGCTCGGAGATGTCGGACTGTACCCAGGAGACGTCGGACTGTATGCAGGAGAGGTGGGGCTGTATGATGG
CGAGGTGGGGCTGTAGGATGGCGAGGTGGGGCTGTAGGACGGCGAGGTGGGGCTATATGATGGTGACGTAGGACTGTATGATGGAGAGGTAGGGCTATAG
ACTGGAGAGGTAGGGCTGTAAGCGGGGGAAGTGGGGCTGTAAGCCGGAGAAGTGGGGCTGTAGCTGGGGGAAGTGGGGCTATAGCTTGGGGAAGTGGGGC
TGTAACTTGGAGAAGTGGGGCTATAGCTCGGGGAAGTGGGGCTATAACTTGGTGATGTGGGGGAATAAGATGGGCTGGTTGGAGAATATGCAGGACTTGT
TGGACTGTAACCAGGAGAGCTGGGGCTGTATGTAGGAGAGGTCGGGCTGTATCCAGGAGAAGTCGGGCTGTATCCAGGAGAGGTTGGGCTGTATCCAGGA
GATGACGGGCTGTAGCCTGGAGATGATGGACTGTACCCCGGAGATAAAGTAGGAGAGAATGCCATCCCGCCAACATATGGAGAAAACTGAGCATCTGATA
TTGGCGAGGAGCGAGCATTAGGGCTCAGCAAGTAATTTGGTGACATCATTCCCTCGTGATATGGGGTTCCCATGATTGGCGAACGAGAAGGCGTCATGCC
AAAATCCAGACCTTCCATATAACTTGGCAATTGAAGCTCAATAGCTTGCTGTAGCATTTGATCA