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Detailed information on CNT30350937


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549101Eragrostis tefIpomoea triloba51.5448.3181.75285forward
CNT30378927Eragrostis tefManihot esculenta52.4446.8581.38290forward
CNT30628784Eragrostis tefVigna unguiculata49.1935.7480.51272forward
CNT30400472Eragrostis tefTriticum turgidum83.7346.4483.37463forward
CNT30256659Eragrostis tefAvena sativa84.6365.4584.62468forward
CNT30141877Eragrostis tefLolium perenne84.09103.7983.23465forward
CNT30205370Eragrostis tefHelianthus annuus53.5345.3382.43296forward
CNT30625703Eragrostis tefDaucus carota55.1528.1180.33305forward
CNT30354623Eragrostis tefLactuca sativa54.0746.6582.27299forward
CNT30705868Eragrostis tefPrunus avium47.5624.7682.51263forward
CNT30641843Eragrostis tefCannabis sativa54.6162.7982.45302forward
CNT30109704Eragrostis tefOryza longistaminata42.6842.4587.71236forward
CNT30149777Eragrostis tefBrachypodium distachyon77.5846.5885.78429forward
CNT3049385Eragrostis tefCucumis sativus73.7851.5280.15408forward

Expression of CNT30350937

Peptides detected in this lncRNA

>peptide 1 (42 aa)
CLESKHAKDCTWPMKDCSLVKLDYSSAKLGCNLVMSGCNQEK*

Sequence

>CNT30350937
GCTGCTTGGAGAGTAAGCATGCGAAGGACTGTACTTGGCCGATGAAGGATTGTAGCTTGGTGAAGTTGGACTATAGTTCGGCGAAGTTGGGCTGTAACTT
GGTGATGTCGGGCTGTAACCAGGAGAAGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGGGCGATGTAGGGCTGTATGAGGGTGATGTTGGGCTGT
ATGAAGGAGATGTCGGGCTGTAGGATGGGGATGTTGGGCTGTACGAAGGAGATGTAGGGCTGTATGAAGGAGATGTAGGGCTGTATGAAGGAGATGTTGG
GCTGTAAGATGGTGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGCGAGGTAGGACTATAAACCGGTGAGGTGGGACTATAACTTGGTGAG
GTGGGACTGTAACTCGGAGAGGTGGGACTATAACTCGGTGAGGTGGGGCTGTAGCTTGGCGATGTTGGACTATAGCTCGGAGATGTAGGGCTGTAACTTG
GTGATGTGGGCGAGTATGACGGACTGGTGGGTGAGTATGATGGACTTGTTGGC