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Detailed information on CNT30149777


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535924Brachypodium distachyonEucalyptus grandis19.4461.0982.12179forward
CNT30549166Brachypodium distachyonIpomoea triloba30.8442.2679.58284forward
CNT30616460Brachypodium distachyonSesamum indicum43.9728.2280.74405forward
CNT30267761Brachypodium distachyonChenopodium quinoa31.1635.1784.32287forward
CNT30727661Brachypodium distachyonCorchorus capsularis33.2248.8882.35306forward
CNT30489027Brachypodium distachyonOlea europaea16.543.9384.87152forward
CNT30506119Brachypodium distachyonNicotiana attenuata23.2453.6382.71214forward
CNT30308418Brachypodium distachyonTriticum aestivum52.4466.9989.65483forward
CNT30400472Brachypodium distachyonTriticum turgidum50.3846.5489.44464forward
CNT30592011Brachypodium distachyonMusa acuminata20.5246.6782.01189forward
CNT3088022Brachypodium distachyonVigna radiata31.1666.4479.44287forward
CNT30235097Brachypodium distachyonBrassica oleracea31.1635.8381.88287forward
CNT30256659Brachypodium distachyonAvena sativa77.3199.5886.94712forward
CNT30263459Brachypodium distachyonBrassica rapa31.1653.0580.84287forward
CNT30468704Brachypodium distachyonSaccharum spontaneum52.8839.5386.04487forward
CNT30141877Brachypodium distachyonLolium perenne48.3299.3389.44445forward
CNT30605857Brachypodium distachyonGossypium raimondii29.2133.1783.27269forward
CNT30205386Brachypodium distachyonHelianthus annuus35.445.5983.74326forward
CNT30350937Brachypodium distachyonEragrostis tef46.5877.5885.78429forward
CNT30596736Brachypodium distachyonOryza meridionalis84.8103.4484.12781forward
CNT30370935Brachypodium distachyonOryza glumipatula85.4581.384.63787forward
CNT30154770Brachypodium distachyonPrunus persica32.4685.1980.27299forward
CNT30641843Brachypodium distachyonCannabis sativa35.0767.1580.19323forward
CNT30577473Brachypodium distachyonOryza barthii33.8857.2586.54312forward
CNT30497905Brachypodium distachyonDigitaria exilis70.2571.6585.32647forward
CNT30335475Brachypodium distachyonCynara cardunculus34.7424.6382.81320forward
CNT3049544Brachypodium distachyonCucumis sativus4349.4478.79396forward

Expression of CNT30149777

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MMAMSGCMMEMSGCMQEMLGCMLERSDYKLAMWDCSSEKWDYNLVMWDCSLAMWDCSLEMWGSMTDWLESTMDLLGSTTDLLGCS*

>peptide 2 (29 aa)
MLGCIQAMSGCMQAMSGCTRAMSGCMMET*

>peptide 3 (32 aa)
MDCNHHQRMGCSLKGQVRMPCPQHMGRTEHLK*

>peptide 4 (43 aa)
CSLEKSDCMGSSSLGCLENKHVKGCTWPKKDCSSVKLDCSLAK*

>peptide 5 (28 aa)
MVSQKARHAQVSCQYILNLQHSSGAEAQW

Sequence

>CNT30149777
CTGTAGTTTGGAGAAGTCTGACTGTATGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGGCTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTTGGACTGTAGTTTGGCGAAGTAGGGCTGTAGCTCGGCGATGTTGGGCTGTATCCAGGCGATGTCGGGCTGTATGCAGGCGATGTCGGGCT
GTACGAGGGCGATGTCGGGCTGTATGATGGAGACGTAGGGCTGTATGAAGGAGACGTAGGGCTGTATGATGGAGACGTAGGGCTGTATGAAGGTGAAGTA
GGGCTGTATGATGGCGATGTCGGGCTGTATGATGGAGATGTCGGGCTGTATGCAGGAGATGTTGGGCTGTATGCTGGAGAGGTCGGACTATAAACTGGCG
ATGTGGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGTGATGTGGGACTGTAGCTTGGCGATGTGGGACTGTAGCTTGGAGATGTGGGGGAGTATGA
CGGACTGGTTGGAGAGTACGATGGACTTGTTGGGGAGTACGACGGACTTGTTGGGCTGTAGCTAGGAGAGCCAGGCGTATATGATGGAGAAGTGGGACTA
TAGCTGGGTGATGCGGGACTATATGATGGAGAAGTCGGGCTGTATCCCTGTCCTGGCCCTGGACTGAAGACTGGAGAAGATGGACTGTAACCACCACCAG
AGGATGGGCTGTAGCTTGAAGGGACAGGTGAGAATGCCATGCCCCCAACATATGGGGAGAACTGAGCATCTGAAATAGGGGAAGACCTGAAATTAGGACT
CAACATTGGTGACATCATTCCTCCATCATGGTATGGTGTCCCAGAAGGCGAGGCACGCGCAGGTGTCATGCCAATATATTCTAAACCTTCAACATAGCTC
GGGAGCTGAAGCTCAATGGCC