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Detailed information on CNT3088022


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 1e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Vigna radiataSetaria italica69.9153.4581.79302forward
CNT30536082Vigna radiataEucalyptus grandis62.2745.4481.04269forward
CNT30267763Vigna radiataChenopodium quinoa79.1749.0780.41342forward
CNT3021339Vigna radiataCitrullus lanatus35.1923.9785.53152forward
CNT30378908Vigna radiataManihot esculenta57.4126.2782.66248forward
CNT30307041Vigna radiataTriticum aestivum64.8152.2479.64280forward
CNT30400271Vigna radiataTriticum turgidum65.7457.3779.58284forward
CNT30256659Vigna radiataAvena sativa80.3248.5378.96347forward
CNT30140910Vigna radiataLolium perenne51.8562.7580.8224forward
CNT30687113Vigna radiataTriticum urartu65.9753.5780.35285forward
CNT30341750Vigna radiataEragrostis tef66.4452.9580.84287forward
CNT30366537Vigna radiataSorghum bicolor69.4434.482.33300forward
CNT30642025Vigna radiataCannabis sativa60.8851.2781.37263forward
CNT3035176Vigna radiataCucumis melo35.8828.1884.52155forward
CNT30149777Vigna radiataBrachypodium distachyon66.4431.1679.44287forward
CNT30497833Vigna radiataDigitaria exilis65.0531.8681.49281forward

Expression of CNT3088022

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKVKWDCKQVKWGYRQVKSGCSWEKSGYNWVMWGCSWVM*

Sequence

>CNT3088022
CTGGGGATTGTAACTAGGGGAAGTAGGACTATACGATGGGGAAGTAGGACTATACGATGGGGATGTTGGGCTATATGAGGGTGACGTAGGGCTGTATCCA
GGTGAAGTGGGGCTGTAAGCAGGGGAAGCAGGGCTATATGATGGGGAGGTAGGGCTGTAAGAGGGTGAAGTGGGGCTGTATGAAGGTGACGTAGGACTGT
ATGAAGGTGAAGTGGGACTGTAAGCAGGTGAAGTGGGGCTATAGGCAGGTGAAGTCGGGCTGTAGCTGGGAGAAGTCGGGCTATAACTGGGTGATGTGGG
GCTGTAGCTGGGTGATGTAGGACTGTAGCTGGGTGATGTTGGGCTATAGCTGGGTGATGTGGGAGAGTAGGATGGACTGGTTGGTGAATAAGCCGGACTT
GTAGGACTATATCCTGGAGAACTAGGGCTATA