Detailed information on CNT30554634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Oryza glaberrimaSetaria italica46.0767.4381.1381forward
CNT30640872Oryza glaberrimaNymphaea colorata61.4367.1179.13508forward
CNT30500604Oryza glaberrimaCoffea canephora30.7141.382.68254forward
CNT30193210Oryza glaberrimaSecale cereale21.2882.2488.07176forward
CNT30400271Oryza glaberrimaTriticum turgidum56.4794.3485.87467forward
CNT30591949Oryza glaberrimaMusa acuminata2644.2482.79215forward
CNT3087851Oryza glaberrimaVigna radiata37.9734.3579.94314forward
CNT30256659Oryza glaberrimaAvena sativa83.5696.6483.07691forward
CNT30608057Oryza glaberrimaGossypium raimondii35.7949.9283.78296forward
CNT3067990Oryza glaberrimaLeersia perrieri45.9599.7489.47380forward
CNT30205103Oryza glaberrimaHelianthus annuus28.5433.3380.93236forward
CNT30341751Oryza glaberrimaEragrostis tef55.0294.0187.25455forward
CNT30354603Oryza glaberrimaLactuca sativa40.5149.4880335forward
CNT30410142Oryza glaberrimaPapaver somniferum48.1360.4979.15398forward
CNT30705862Oryza glaberrimaPrunus avium39.6630.8979.88328forward
CNT30149986Oryza glaberrimaBrachypodium distachyon92.6285.484.07766forward
CNT30103004Oryza glaberrimaOryza rufipogon100.1283.0598.07828forward
CNT30497905Oryza glaberrimaDigitaria exilis102.5493.9181.84848forward

Expression of CNT30554634

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHP*

>peptide 2 (88 aa)
MQEMSDCMRVMSDCMRGKWGCKTEMLDCMMEMLGYMMVMWGCKMVMWGYKMEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

>peptide 3 (54 aa)
LVKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

Sequence

>CNT30554634
ATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA
GTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGG
GTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGATGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCTGTA
AGATGGTGATGTGGGGCTATAAGATGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAGTGGGA
CTATAACTTGGCGAGGTCGGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGATGGACTGG
TAGGTGAGTATGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGG
AGAAGTTGGGCTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGA
AAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCATG
ATATGGTGTCCCAGAGATGGGCGAGCG