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Detailed information on CNT30497905


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 4e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316118Digitaria exilisCorylus avellana27.4634.7382.26248forward
CNT30549166Digitaria exilisIpomoea triloba28.7938.6981.15260forward
CNT30516792Digitaria exilisJuglans regia33.7834.2780.66305forward
CNT30700558Digitaria exilisQuercus lobata19.665.5683.62177forward
CNT30616460Digitaria exilisSesamum indicum49.531.1580.76447forward
CNT30269263Digitaria exilisChenopodium quinoa48.1757.0981.15435forward
CNT3021339Digitaria exilisCitrullus lanatus39.0955.6879.89353forward
CNT30727660Digitaria exilisCorchorus capsularis41.4268.3780.21374forward
CNT30378908Digitaria exilisManihot esculenta38.136.4481.1344forward
CNT30403468Digitaria exilisBeta vulgaris39.4245.9980.62356forward
CNT30524932Digitaria exilisPhaseolus vulgaris29.3556.581.89265forward
CNT30628902Digitaria exilisVigna unguiculata38.4378.3380.4347forward
CNT30506121Digitaria exilisNicotiana attenuata29.7964.9881.78269forward
CNT3042435Digitaria exilisPrunus dulcis32.1241.9180.34290forward
CNT3091337Digitaria exilisSolanum tuberosum35.4439.2280.31320forward
CNT30304911Digitaria exilisTriticum aestivum50.6176.4283.59457forward
CNT30400271Digitaria exilisTriticum turgidum52.1695.1585.14471forward
CNT30559890Digitaria exilisActinidia chinensis44.0858.2781.16398forward
CNT30591924Digitaria exilisMusa acuminata28.1347.6581.5254forward
CNT3087851Digitaria exilisVigna radiata38.137.6480.52344forward
CNT30508722Digitaria exilisSolanum lycopersicum28.4650.182.49257forward
CNT30554634Digitaria exilisOryza glaberrima93.91102.5481.84848forward
CNT30256659Digitaria exilisAvena sativa66.3383.7882.14599forward
CNT30312353Digitaria exilisCamelina sativa23.8152.4483.72215forward
CNT30263540Digitaria exilisBrassica rapa30.1242.1780.88272forward
CNT30468644Digitaria exilisSaccharum spontaneum85.9482.4789.69776forward
CNT30141877Digitaria exilisLolium perenne47.9596.6584.53433forward
CNT30216750Digitaria exilisKalanchoe fedtschenkoi35.1164.6979.81317forward
CNT3067990Digitaria exilisLeersia perrieri41.7598.9585.68377forward
CNT30205370Digitaria exilisHelianthus annuus34.2247.3281.55309forward
CNT30625810Digitaria exilisDaucus carota38.4351.1881.56347forward
CNT30688581Digitaria exilisTriticum urartu42.0865.484.21380forward
CNT30350933Digitaria exilisEragrostis tef72.3183.483.77653forward
CNT30366537Digitaria exilisSorghum bicolor96.4699.8990.93871forward
CNT30620243Digitaria exilisCajanus cajan23.1562.9582.3209forward
CNT30596736Digitaria exilisOryza meridionalis58.9170.4683.46532forward
CNT30354603Digitaria exilisLactuca sativa36.148.1582.52326forward
CNT30370935Digitaria exilisOryza glumipatula99.4592.7780.62898forward
CNT30154770Digitaria exilisPrunus persica29.4675.7880.83266forward
CNT30641843Digitaria exilisCannabis sativa43.8582.3379.55396forward
CNT3028162Digitaria exilisTheobroma cacao24.1438.8683.03218forward
CNT30330867Digitaria exilisDioscorea rotundata32.1240.1184.48290forward
CNT30149777Digitaria exilisBrachypodium distachyon71.6570.2585.32647forward
CNT30584421Digitaria exilisEchinochloa crusgalli91.58102.6189.96827forward
CNT30335475Digitaria exilisCynara cardunculus32.7822.7982.09296forward

Expression of CNT30497905

Peptides detected in this lncRNA

>peptide 1 (40 aa)
RVARTCNLEKSDCMVSSSGCLESKHAKGCTWLKKDCSLEK*

>peptide 2 (32 aa)
VELRAPVIWRSLTVWCHPRAAWRVSMRRAVLG*

>peptide 3 (33 aa)
MDCIPLMMESSHLATGKVRMPCAQHMVRTKHLC*

>peptide 4 (29 aa)
MLGCNLEMWASMMDWLASKLDLLGSNSGL*

Sequence

>CNT30497905
GTAGAGTTGCGCGCACCTGTAATTTGGAGAAGTCTGACTGTATGGTGTCATCCTCGGGCTGCTTGGAGAGTAAGCATGCGAAGGGCTGTACTTGGCTGAA
GAAGGATTGTAGCTTGGAGAAGTAGGACTGTAGCTTGGCGATGTCGGGCTGTAGCTTGGTGATGTTGGGCTGTATCCAGGTGAGGTAGGACTGTATGCAG
GGGATGTCGGGCTGTATGAGGGGGAGGTCGGGCTGTATGATGGGGAGGTCGGGCTGTATGAAGGAGACGTAGGGCTGTATGAAGGAGACGTAGGGCTGTA
TGATGGTGATGTTGGGCTATAAGATGGTGACGTTGGGCTGTAGGCAGGAGAGGTAGGGCTATATGCAGGCGAGGTTGGACTATAAACTGGCGAGGTGGGG
CTGTAGCTTGGGGATGTAGGACTGTAGCTCGGAGATGTTGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTGGGAGATGTTGGGCTGTAACTTGGAGATG
TGGGCGAGTATGATGGACTGGTTGGCGAGTAAGTTGGACTTGTTGGGGAGTAATTCGGGCTTGTAGGACTGTAAGTGGGAGAGCCAGGTGTATATGATGG
TGAGGTGGGACTATAGCTTGGTGAAGCAGGGCTGTATGATGGAGAAAGCGGGCTATATCCTTTTTCTGGGGTGAAAACTGGAGAAGATGGACTGTATCCC
CCTGATGATGGAGAGTAGCCACCTGGCGACGGGAAAGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTGTTAATGGGGGAAGCCC
TGATGTTCGGACTCAGCAGATAACTTGGCGACATCATTCCTTCATGATATGGTGTCCCAGAGATGGGTGAACGTGCTGGTGTCATGCCAAAGTCCAAACC
TTC