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Detailed information on CNT30668234


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Triticum dicoccoidesSetaria viridis21.645.285.04127forward
CNT30523577Triticum dicoccoidesSetaria italica59.3556.3885.39349forward
CNT30269247Triticum dicoccoidesChenopodium quinoa13.6127.0391.2580forward
CNT30379142Triticum dicoccoidesManihot esculenta51.0232.1279.67300forward
CNT30403782Triticum dicoccoidesBeta vulgaris14.4620.3387.0685forward
CNT30195835Triticum dicoccoidesPisum sativum17.6940.9484.62104forward
CNT30193210Triticum dicoccoidesSecale cereale25.6870.5698.68151forward
CNT30308418Triticum dicoccoidesTriticum aestivum34.6928.2999.02204forward
CNT30398985Triticum dicoccoidesTriticum turgidum34.6931.5899.51204forward
CNT30508722Triticum dicoccoidesSolanum lycopersicum24.6628.2784.14145forward
CNT30554721Triticum dicoccoidesOryza glaberrima77.5548.7783.99456forward
CNT30442780Triticum dicoccoidesAegilops tauschii77.5557.597.59456forward
CNT30256659Triticum dicoccoidesAvena sativa60.7149.9389.36357forward
CNT30312432Triticum dicoccoidesCamelina sativa27.3841.3983.23161forward
CNT30263540Triticum dicoccoidesBrassica rapa33.530.5482.74197forward
CNT30468540Triticum dicoccoidesSaccharum spontaneum29.0819.7588.3171forward
CNT30141877Triticum dicoccoidesLolium perenne27.5536.1691.36162forward
CNT3016767Triticum dicoccoidesZea mays28.7422.3587.57169forward
CNT3067990Triticum dicoccoidesLeersia perrieri33.6751.9782.32198forward
CNT30688678Triticum dicoccoidesTriticum urartu10093.9398.98588forward
CNT30350934Triticum dicoccoidesEragrostis tef42.0167.385.83247forward
CNT30366570Triticum dicoccoidesSorghum bicolor27.3826.3187.58161forward
CNT30620243Triticum dicoccoidesCajanus cajan26.3646.6983.23155forward
CNT30596736Triticum dicoccoidesOryza meridionalis28.422.1291.62167forward
CNT30370935Triticum dicoccoidesOryza glumipatula77.5547.1184.65456forward
CNT30573855Triticum dicoccoidesVitis vinifera38.9538.0481.66229forward
CNT3051605Triticum dicoccoidesAmborella trichopoda30.9527.4581.32182forward
CNT30109704Triticum dicoccoidesOryza longistaminata61.5665.1182.32362forward
CNT30150023Triticum dicoccoidesBrachypodium distachyon10078.488.27588forward
CNT30103004Triticum dicoccoidesOryza rufipogon77.5545.7484.65456forward
CNT30577473Triticum dicoccoidesOryza barthii28.430.6491.62167forward
CNT30584421Triticum dicoccoidesEchinochloa crusgalli29.0821.2287.13171forward
CNT30497803Triticum dicoccoidesDigitaria exilis73.359.9481.67431forward
CNT30558075Triticum dicoccoidesPanicum hallii28.7421.4289.35169forward
CNT30551544Triticum dicoccoidesOryza brachyantha51.743.7483.88304forward

Expression of CNT30668234

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MQEMSDCMLARSDYKPVMLDYSSEMWGYSLVMLGCSSEMWGCS*

>peptide 2 (32 aa)
SSLGCLENKHVKDCTWPKKDCSSVKWGCSSVK*

>peptide 3 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHP*

>peptide 4 (60 aa)
MWGCSSGMLASMMDWSESMMDWSGCRKESQAYMMERWGCSWAMQGCMMEKWDCNHVLALG*

Sequence

>CNT30668234
ATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTCGGTGAAGTGGGGCTGTAGTTCGGTGAAGTAG
GGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGCTGGCGAGGTCGGACTATAAACCGGTGA
TGTTGGACTATAGCTCGGAGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCTC
GGGGATGTTGGCGAGTATGATGGACTGGTCGGAGAGTATGATGGACTGGTCGGGCTGTAGGAAGGAGAGCCAGGCGTATATGATGGAGAGGTGGGGCTGT
AGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTAACCACCTCCAGA
GGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCATGCCCCCAACATATGGTGAGAACTGAGCATCCGTAATTGGGGAAGCCCTG