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Detailed information on CNT30608057


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Gossypium raimondiiEucalyptus grandis72.1872.384.81428forward
CNT30628902Gossypium raimondiiVigna unguiculata72.6897.2981.44431forward
CNT30490956Gossypium raimondiiOlea europaea50.4271.1980.27299forward
CNT30506121Gossypium raimondiiNicotiana attenuata32.2146.1484.29191forward
CNT30554634Gossypium raimondiiOryza glaberrima49.9235.7983.78296forward
CNT30256659Gossypium raimondiiAvena sativa49.4140.9883.28293forward
CNT30141877Gossypium raimondiiLolium perenne38.2850.6781.94227forward
CNT30216750Gossypium raimondiiKalanchoe fedtschenkoi60.5473.2781.06359forward
CNT3067990Gossypium raimondiiLeersia perrieri39.2961.1584.98233forward
CNT30205386Gossypium raimondiiHelianthus annuus44.3536.7882.89263forward
CNT30350936Gossypium raimondiiEragrostis tef59.5377.5881.87353forward
CNT30366537Gossypium raimondiiSorghum bicolor44.8630.580.83266forward
CNT30596736Gossypium raimondiiOryza meridionalis39.831.2684.32236forward
CNT30370935Gossypium raimondiiOryza glumipatula53.9633.0683.75320forward
CNT30574023Gossypium raimondiiVitis vinifera74.779.6881.49443forward
CNT3023318Gossypium raimondiiPopulus trichocarpa58.8554.5381.38349forward
CNT30103004Gossypium raimondiiOryza rufipogon49.9229.6983.78296forward
CNT30584450Gossypium raimondiiEchinochloa crusgalli52.4541.5281.03311forward
CNT30498009Gossypium raimondiiDigitaria exilis66.4440.2580.46394forward
CNT30114394Gossypium raimondiiFicus carica48.5748.479.86288forward
CNT30335475Gossypium raimondiiCynara cardunculus58.5226.7180.98347forward

Expression of CNT30608057

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MWDCNLVRLDCTQEKWGYKREMWGYRKEMWGCTKEMWGCMMEMWGCTMEKWGYMQEKWGYMQEKWGYIRVKWGCS*

>peptide 2 (34 aa)
MLDCKDWKETTLDYLVSMPETDCTWLTAGCNLER*

Sequence

>CNT30608057
CTGTAATTAGGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTACTTGGTGAGTATGCCAGAGACGGACTGTACTTGGCTGACTGCGGGT
TGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGATGTGGGACTGTAACTTGGTGAGGTTGGACTGTACCCAGGAGAAGTGGGGCTATAAGCGGGAGATGT
GGGGCTATAGGAAGGAGATGTGGGGCTGTACGAAGGAGATGTGGGGCTGTATGATGGAGATGTGGGGCTGTACGATGGAGAAGTGGGGCTATATGCAGGA
GAAGTGGGGCTATATGCAGGAGAAGTGGGGCTATATACGGGTGAAGTGGGGCTGTAGCTAGGTGAAGTGGGACTGTAACTGGGGGATGTGGGACTGTAAC
TTGGAGATGTAGGGCTGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGAGGTTGGAGAATATGAGGGGCTGGTAGGAGAGTAGGCTGGACTTGTCGGACT
GTATCCTGGAGATGATGGGCTGTAACCGGGGGATGACGTAGGAGAGAATGCCATTCCACCAACATAAGGCGAGAACTGTGCATCTGAAATGGG