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Detailed information on CNT30376525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 6e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549224Arabidopsis thalianaIpomoea triloba54.1267.5479.71414forward
CNT30700805Arabidopsis thalianaQuercus lobata30.0775.9184.35230forward
CNT30616442Arabidopsis thalianaSesamum indicum71.952.8881.45550forward
CNT30378927Arabidopsis thalianaManihot esculenta48.159.4580.71368forward
CNT30628927Arabidopsis thalianaVigna unguiculata51.247080.87392forward
CNT30195835Arabidopsis thalianaPisum sativum32.4297.6481.45248forward
CNT30506120Arabidopsis thalianaNicotiana attenuata41.9654.8780.06321forward
CNT30307041Arabidopsis thalianaTriticum aestivum42.7561.0181.04327forward
CNT30400271Arabidopsis thalianaTriticum turgidum40.2662.2281.49308forward
CNT30145737Arabidopsis thalianaMedicago truncatula47.7159.2581.37365forward
CNT30256659Arabidopsis thalianaAvena sativa35.1637.6282.16269forward
CNT30312132Arabidopsis thalianaCamelina sativa77.5291.5190.22593forward
CNT3017147Arabidopsis thalianaZea mays45.6248.8182.81349forward
CNT30605857Arabidopsis thalianaGossypium raimondii46.5443.983.71356forward
CNT30154934Arabidopsis thalianaPrunus persica59.8799.1382.97458forward
CNT3035176Arabidopsis thalianaCucumis melo49.6769.0982.37380forward
CNT30176441Arabidopsis thalianaVigna angularis54.3868.7679.81416forward
CNT30335477Arabidopsis thalianaCynara cardunculus27.8456.0582.16213forward

Expression of CNT30376525

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MMDYILEKKKAKRPFHQHMEKTVHLTLGINAYLDLTGSLETSCLHGKECLTLVNEQESFQIQDHPY

>peptide 2 (36 aa)
MLGCKKVKLGCMLVKLGCKQVKSGCKQAKSGCNLGK*

Sequence

>CNT30376525
TGGGAGATGTAGGACTGTAGGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGTTGTAGCT
TGGAGACGTAGGACCGTAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGTAGGGCTG
TAAGACGGAGATGTTGGGCTGTAAGATGGTGAAGTAGGGCTGTAAGAAGGCGATGTTGGGCTGTAAGAAGGTGAAGTTGGGCTGTATGCTGGTGAAGTTG
GGCTGTAAGCAGGTGAAGTCGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGGGAAGTAGGACTGTAGCTCGGAGATGTCGGGCTGTAGCTTGGCGA
CGTTGGGCTATAGCTTGGAGACGTTGGGCTGTAGCTCGGAGAGGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCTATAGCCA
GGAGAACTGGGACTGTAGGTAGGCGAAGTTGGACTGTAACCGGGAGAAGTAGGACTGTATCCAGGCGATGATGGACTATATCCTGGAGAAGAAGAAGGCG
AAAAGGCCATTCCACCAACATATGGAGAAAACTGTGCATCTGACATTGGGGATAAACGCATATTTGGACTTAACAGGTAGTTTGGAGACATCATGCCTTC
ATGGTAAGGAGTGCCTGACACTGGTGAACGAGCAGGAGTCATTCCAAATTCAAGACCATCCATAT