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Detailed information on CNT30727660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 4e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Corchorus capsularisEucalyptus grandis97.4490.0378.8533forward
CNT30516792Corchorus capsularisJuglans regia98.5460.5683.49539forward
CNT30700805Corchorus capsularisQuercus lobata54.1197.6983.11296forward
CNT30269263Corchorus capsularisChenopodium quinoa66.7347.980365forward
CNT30378927Corchorus capsularisManihot esculenta86.4776.4182.45473forward
CNT30628928Corchorus capsularisVigna unguiculata74.4181.5679.85407forward
CNT30506119Corchorus capsularisNicotiana attenuata32.9145.1182.22180forward
CNT30710529Corchorus capsularisGlycine max53.0251.4280.34290forward
CNT3091361Corchorus capsularisSolanum tuberosum61.2445.5880335forward
CNT30400472Corchorus capsularisTriticum turgidum46.9825.7880.54257forward
CNT30591924Corchorus capsularisMusa acuminata89.7692.1280.65491forward
CNT30508722Corchorus capsularisSolanum lycopersicum51.3754.7880.07281forward
CNT30554721Corchorus capsularisOryza glaberrima59.634.8782.52326forward
CNT30171519Corchorus capsularisTrifolium pratense38.2161.4780.86209forward
CNT30145737Corchorus capsularisMedicago truncatula77.1568.5181.04422forward
CNT30256659Corchorus capsularisAvena sativa50.8238.8879.5278forward
CNT30311725Corchorus capsularisCamelina sativa54.373.1584.51297forward
CNT30468540Corchorus capsularisSaccharum spontaneum49.7331.4181.99272forward
CNT30605857Corchorus capsularisGossypium raimondii98.5466.4690.17539forward
CNT3067979Corchorus capsularisLeersia perrieri64.5398.0680.74353forward
CNT30205103Corchorus capsularisHelianthus annuus60.6946.8979.82332forward
CNT30713436Corchorus capsularisMalus domestica golden35.6560.5683.08195forward
CNT30350936Corchorus capsularisEragrostis tef64.3577.3680.97352forward
CNT30366537Corchorus capsularisSorghum bicolor76.648.0579.24419forward
CNT30620243Corchorus capsularisCajanus cajan42.670.1881.55233forward
CNT3051546Corchorus capsularisAmborella trichopoda42.0547.7282.17230forward
CNT30121049Corchorus capsularisCitrus clementina96.8948.9884.34530forward
CNT30497905Corchorus capsularisDigitaria exilis68.3741.4280.21374forward
CNT30114394Corchorus capsularisFicus carica33.2730.5984.62182forward

Expression of CNT30727660

Peptides detected in this lncRNA

>peptide 1 (31 aa)
GDVGLYGLEGDNLGLLGEYARDGLYLADCGL*

>peptide 2 (35 aa)
AMLDYTGWKETTWDCLVSMQETDYTWQTVDCNLER*

>peptide 3 (33 aa)
MLDCMMGMLGCMMEKWDYRQVKLGYIQVTWGCN*

Sequence

>CNT30727660
CGGCGATGTTGGACTATACGGGCTGGAAGGAGACAACCTGGGACTGCTTGGTGAGTATGCAAGAGACGGACTATACTTGGCAGACTGTGGATTGTAACTT
GGAGAGGTAGGACTATAGCTTGGCGATGTCGGACTATAACTTGGTGAGGTTGGACTGTACCCTGGAGAAGTGGGGCTATAGGCTGGAGAAGTAGGACTGT
ATGATGGAGACGTAGGGCTATAGGAGGGTGAGGTCGGGCTGTAAGAAGGAGATGTTGGACTGTATGATGGGGATGTTGGGCTGTATGATGGAGAAGTGGG
ACTATAGGCAGGTGAAGTTGGGCTATATACAGGTGACGTGGGGCTGTAACTAGGTGAAGTTGGACTATAGCTCGGAGAGGTGGGACTGTAACTTGGGGAA
GTGGGACTGTAACTTGGGGATGTAGGGCTGTAACTTGGCGATGTAGGGCTGTAGCTTGGAGAGGTCGGAGAATAAGATGGACTAGTAGGAGAATAGGCTG
GACTTGTTGGACTGTAACCTGGTGAACTTGGACTGTAAGTAGGTGAT